Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_D12
         (440 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M18540-1|AAA28078.1|  640|Caenorhabditis elegans protein ( C.ele...    29   1.1  
Z81122-1|CAB03353.1|  124|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z78412-6|CAD24482.1|  424|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z78412-5|CAB01648.1|  484|Caenorhabditis elegans Hypothetical pr...    28   3.5  
L03524-2|AAA28151.1|  488|Caenorhabditis elegans protein-tyrosin...    28   3.5  
U61955-9|AAC24409.3|  371|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AF101318-7|AAC69345.1|  826|Caenorhabditis elegans Hypothetical ...    27   6.0  

>M18540-1|AAA28078.1|  640|Caenorhabditis elegans protein (
           C.elegans heat shockprotein 70A gene, complete cds. ).
          Length = 640

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = -2

Query: 139 ENFMKRMVNFYQVQ------KGISLTPEQWRKLLSVGEEVNETVSSMC 14
           E+F  RMVN +  +      K ++  P   R+L +  E  NET+SS C
Sbjct: 232 EDFDNRMVNHFCAEFKRKHKKDLASNPRALRRLRTACERANETLSSSC 279


>Z81122-1|CAB03353.1|  124|Caenorhabditis elegans Hypothetical
           protein T13F2.2 protein.
          Length = 124

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = -1

Query: 257 AEKKAKMADRTNDKEPTWVLQ--GKKLLKVREFKGKVYVDIREFY--EKNGELLPGTK 96
           A+ + +++ R  D +   + +    +   V +FKGK YV+IRE+Y    + +++P  K
Sbjct: 44  AKNEEEVSGRLKDSDGNEMFEIGNLRYATVSKFKGKEYVNIREYYIDRDSQKMMPSRK 101


>Z78412-6|CAD24482.1|  424|Caenorhabditis elegans Hypothetical
           protein M176.6b protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 185 LLKVREFKGKVYVDIREFYEKNGELLPGTKRDKSH 81
           LLK  E K  ++ D    YEKNG LLP + R K++
Sbjct: 177 LLKFLEEKKSIFKD-ELVYEKNGYLLPKSIRRKTY 210


>Z78412-5|CAB01648.1|  484|Caenorhabditis elegans Hypothetical
           protein M176.6a protein.
          Length = 484

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 185 LLKVREFKGKVYVDIREFYEKNGELLPGTKRDKSH 81
           LLK  E K  ++ D    YEKNG LLP + R K++
Sbjct: 237 LLKFLEEKKSIFKD-ELVYEKNGYLLPKSIRRKTY 270


>L03524-2|AAA28151.1|  488|Caenorhabditis elegans protein-tyrosine
           kinase protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 185 LLKVREFKGKVYVDIREFYEKNGELLPGTKRDKSH 81
           LLK  E K  ++ D    YEKNG LLP + R K++
Sbjct: 241 LLKFLEEKKSIFKD-ELVYEKNGYLLPKSIRRKTY 274


>U61955-9|AAC24409.3|  371|Caenorhabditis elegans Hypothetical
           protein M03D4.6 protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 6   NIKHMELTVSLTSSPTDNNFLHCSGVRLIPFCTW*KFTILF 128
           N++   +  S+  SP  N F HC  V     C   K+T+L+
Sbjct: 248 NLQPGTIVDSVIVSPDYNKFFHCGAVARQGTCKATKYTVLY 288


>AF101318-7|AAC69345.1|  826|Caenorhabditis elegans Hypothetical
           protein Y73C8C.3 protein.
          Length = 826

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 216 RANMGVTGQEITESPRIQRKSICRHKRIL*KE 121
           RA +  T QE+ E+ R+Q K I  H+  L K+
Sbjct: 613 RAQVQTTQQELNETIRLQMKQILDHQNALVKK 644


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,592,593
Number of Sequences: 27780
Number of extensions: 150266
Number of successful extensions: 452
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)