Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_D09
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    28   1.4  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    27   1.9  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    27   2.5  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    27   2.5  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    27   2.5  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    27   2.5  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.4  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     26   5.8  

>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +2

Query: 221  RKFQHPLFTVFNFFSYRMAFYLFKFHI*STLLQTFVGVRIFLF*TNWQRTNTGILIGTFI 400
            RK + P  ++F F  ++M      + +  TL+  F G  IF + +N    NT I+  TF+
Sbjct: 1000 RKPEKPGASLFTFDMWKMIICQSMYQLAVTLVLHFAGNSIFHYPSNTADMNT-IVFNTFV 1058

Query: 401  F 403
            +
Sbjct: 1059 W 1059


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 582 SKVQHRKWMCADQLSHHI 529
           S+V H+KW C  Q+S H+
Sbjct: 117 SRVLHQKWTCVAQMSTHL 134


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 611 WINVHYFLRIFTKYFSFFTA 670
           WIN  Y L IF+   SFFTA
Sbjct: 114 WINFLYILWIFSVAMSFFTA 133


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 611 WINVHYFLRIFTKYFSFFTA 670
           WIN  Y L IF+   SFFTA
Sbjct: 114 WINFLYILWIFSVAMSFFTA 133


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 611 WINVHYFLRIFTKYFSFFTA 670
           WIN  Y L IF+   SFFTA
Sbjct: 114 WINFLYILWIFSVAMSFFTA 133


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 611 WINVHYFLRIFTKYFSFFTA 670
           WIN  Y L IF+   SFFTA
Sbjct: 114 WINFLYILWIFSVAMSFFTA 133


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 670 SSEEGEIFSEDSQEIVDIDPMD 605
           S+EE E  +E  QE+ D+DP+D
Sbjct: 287 STEEMENLNELEQEVQDLDPID 308


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 646 SEDSQEIVDIDPMDLRHKLLSLKSTTQKMDV 554
           SE+ +E+ ++DP++  HK + +       DV
Sbjct: 362 SEEDEELWELDPVEFIHKYIDIYDDFNSADV 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,185
Number of Sequences: 5004
Number of extensions: 54269
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)