Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_D09
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0910 + 24225180-24225415,24225523-24225678,24226387-242264...    31   0.64 
10_01_0355 + 3912019-3913046,3914354-3914678                           31   0.85 
05_02_0033 + 5847754-5847982,5848308-5848437,5849038-5849116,584...    29   2.6  
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879...    29   2.6  
03_02_0899 + 12257831-12257858,12258490-12258561,12259121-122604...    28   7.9  
01_06_1716 + 39401608-39402197,39402305-39403388                       28   7.9  

>12_02_0910 +
           24225180-24225415,24225523-24225678,24226387-24226450,
           24226738-24226947,24227678-24227866,24228044-24228342,
           24228575-24228851,24229045-24229317,24230316-24230549,
           24230707-24230856
          Length = 695

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
 Frame = +3

Query: 252 LTFLVTEWPSICLSFISKARSSRRLWAS-EYFCSEPTGKGPTQESSSEL-SYLMTSLVAN 425
           +T++VT W SI       A     LW S    C     K P+    SE+   L+  L+  
Sbjct: 482 ITYVVTSWTSIASELTQTAALLFHLWGSCAKCCKRDESKPPSMHYHSEIPRVLLFGLLGL 541

Query: 426 TLRISSGMEGP-MLVDVWIPVFSFSEDFLLLYR-SCKCGGRAGP--H-TSIFCVVLL 581
           T  I S +  P +LV   +  F +      +Y      GGR  P  H  +IF +VL+
Sbjct: 542 TYFIVSPLILPFVLVYFCLGYFIYRNQLFNVYSPKYDTGGRFWPIVHGGTIFSLVLM 598


>10_01_0355 + 3912019-3913046,3914354-3914678
          Length = 450

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 11  IFLFFVPGFSLSGLXLAXQRSRCIFFFNLSRCFSSFI 121
           +F+    GFSL     A     C++FF + R   SFI
Sbjct: 284 LFVGLYQGFSLRAADFAGLEGNCVYFFKMDRASRSFI 320



 Score = 31.1 bits (67), Expect = 0.85
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 11  IFLFFVPGFSLSGLXLAXQRSRCIFFFNLSRCFSSFI 121
           +F+    GFSL     A     C++FF + R   SFI
Sbjct: 385 LFVGLYQGFSLRAADFAGLEGNCVYFFKMDRASRSFI 421


>05_02_0033 +
           5847754-5847982,5848308-5848437,5849038-5849116,
           5849194-5849251,5849732-5850795,5850899-5851003,
           5851369-5851473
          Length = 589

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = -2

Query: 319 LEERALDMKLKQIEGHSVTKKVKHREQWMLEL-PEAKAKYLGLEARSFRAKQGPDMTDRS 143
           L E  LD   KQ++G     +  H  +   ++ PEA  ++L       +  Q      + 
Sbjct: 436 LIENTLDSFSKQVKGRMNACQSNHDAECDEQMIPEAPKEHLRAARLKKKPVQNKSSKRQR 495

Query: 142 SWTDNPEDKARKAAGQV 92
           +WTD    K +KA  +V
Sbjct: 496 NWTDKQHKKNKKAPAKV 512


>02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,
            87962-88042,88133-88237,88338-88568,88665-90197,
            90660-90752,91477-92887,93184-93305,93479-93718,
            94521-94682,94770-94937,95025-95141,95266-95376,
            95919-96506
          Length = 1787

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +3

Query: 312  SSRRLWASEYFCSEPTGKGPTQESSSELSYLMTSLVANTLRISSGMEGPMLVD 470
            S R +   EYF    TG GPT E  + LS+ + S+     R SS  +  M +D
Sbjct: 1375 SQRAVLEVEYFGEVGTGLGPTLEFYTLLSHELQSVRLGLWRSSSPSDTGMQID 1427


>03_02_0899 +
           12257831-12257858,12258490-12258561,12259121-12260413,
           12260593-12261224
          Length = 674

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 499 KIFYYCTDLVNVVGELVRTHPFSVLYF*VKAICVLNPLD 615
           + +YY  D   VV E V T  FS +   +K I    PLD
Sbjct: 438 RAYYYSKDEKLVVYEYVATGSFSAMLHGIKGIAEKTPLD 476


>01_06_1716 + 39401608-39402197,39402305-39403388
          Length = 557

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +3

Query: 189 ASNPKYLALASGSSNIHCSRCLTFLVTEWPSICLSFISK--ARSSRRLWASEYFCSEPTG 362
           A+  ++    + ++N     C   L  EW +   S + +  A  +   WA    C EP G
Sbjct: 412 ATGSRHHLFHANNANFVLQSCKPLLGDEWAAARESIVERHVAGYAEACWAPVVACLEPAG 471

Query: 363 KGPTQESSSELS 398
           + P  +  ++ S
Sbjct: 472 RKPAAKVVAKFS 483


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,031,524
Number of Sequences: 37544
Number of extensions: 336574
Number of successful extensions: 909
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)