Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_D07
         (601 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0151 + 1186678-1187042,1187926-1188043                           31   0.93 
03_06_0340 + 33252677-33252864,33253086-33254442,33254565-332546...    28   6.6  
07_03_1140 - 24258627-24258849,24259967-24260089,24260200-242609...    27   8.7  
06_01_0585 - 4200230-4201282                                           27   8.7  
04_04_0634 - 26777889-26778452,26778526-26778797,26778905-267791...    27   8.7  
01_01_0905 + 7116121-7116236,7116285-7116339,7116948-7117005,711...    27   8.7  

>08_01_0151 + 1186678-1187042,1187926-1188043
          Length = 160

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 597 RQEEARLEARRFVDRRSEGPYSESDDQKFNEALKQ 493
           R+ +AR  ARRF  R  +GPY   D+Q+  E + +
Sbjct: 108 RKRKARSAARRFRRRHFKGPYPFGDEQEPKEGIME 142


>03_06_0340 +
           33252677-33252864,33253086-33254442,33254565-33254667,
           33256081-33256171,33257208-33257300,33258316-33258471,
           33258583-33258655
          Length = 686

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 398 YQGPKVCPSSGKSLPSAARFSSFVRGNSCGLCC 496
           YQGP V      + P   R  SF+ G    LCC
Sbjct: 637 YQGPPVMAPPQYAAPPPRRQPSFLEGCLAALCC 669


>07_03_1140 -
           24258627-24258849,24259967-24260089,24260200-24260921,
           24260945-24261073,24261484-24261714
          Length = 475

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 554 DVAKARIASPTIKSSMKL*NNKDHSYCLEQS 462
           DV  AR  S  + ++  L N K ++YC EQS
Sbjct: 439 DVPAARNKSHVVANASLLQNTKSNTYCTEQS 469


>06_01_0585 - 4200230-4201282
          Length = 350

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 339 NKQNLLKTTCKQRLPFPINHTKARKCVLPLANHYHLLPVSAALFEAI 479
           NK+ L++    +RLP  ++H +  K ++P+  H H  P + A  E +
Sbjct: 145 NKEALVEALLHKRLPKALSHIRGLKDMIPI--HLHPKPDADAAGEEV 189


>04_04_0634 -
           26777889-26778452,26778526-26778797,26778905-26779117,
           26779497-26779578
          Length = 376

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 396 HTKARKCVLPLANHYHLLPVSAALF 470
           H ++  C L +  H+HLLP  AA F
Sbjct: 240 HRQSHPCKLEVEYHHHLLPQEAAPF 264


>01_01_0905 +
           7116121-7116236,7116285-7116339,7116948-7117005,
           7117637-7117731,7117823-7117926,7118310-7118438,
           7118845-7120633,7120849-7121054,7121865-7121949,
           7122183-7122422
          Length = 958

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -2

Query: 588 EARLEARRFVDRRSEGPYSESDDQKFNEALKQQRPQLLPRTKLLKRAADGNDLPEE 421
           E+ L+ RR + +       + DD    + LK     ++  T   +R+  GN  PEE
Sbjct: 2   ESLLDLRRLLKKEKSAMNQKGDDLSMGKRLKALLTIVMRTTGPTRRSTKGNWTPEE 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,991,753
Number of Sequences: 37544
Number of extensions: 233386
Number of successful extensions: 526
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)