Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_D07
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49068-5|CAA88863.2|  707|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U97552-5|AAQ01520.1|  605|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U97552-4|AAX55684.1|  666|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U97552-3|AAQ01521.1|  663|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z49068-5|CAA88863.2|  707|Caenorhabditis elegans Hypothetical
           protein K01C8.5 protein.
          Length = 707

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 407 PKVCPSSGKSLPSAARFSSFVRGNSC 484
           P +  SSG  L   ARF++F R NSC
Sbjct: 44  PSIRRSSGSDLMPVARFNNFKRWNSC 69


>U97552-5|AAQ01520.1|  605|Caenorhabditis elegans Hypothetical
           protein W05H7.4a protein.
          Length = 605

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 338 KQTKPFKNYL*TTASLPHKSYQGPKVCPSSGKSLPS 445
           ++T+P  NY   T S+P      P   P+S   LPS
Sbjct: 279 QETEPVTNYYTATTSVPETPEPAPAAQPASRFELPS 314


>U97552-4|AAX55684.1|  666|Caenorhabditis elegans Hypothetical
           protein W05H7.4e protein.
          Length = 666

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 338 KQTKPFKNYL*TTASLPHKSYQGPKVCPSSGKSLPS 445
           ++T+P  NY   T S+P      P   P+S   LPS
Sbjct: 340 QETEPVTNYYTATTSVPETPEPAPAAQPASRFELPS 375


>U97552-3|AAQ01521.1|  663|Caenorhabditis elegans Hypothetical
           protein W05H7.4b protein.
          Length = 663

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 338 KQTKPFKNYL*TTASLPHKSYQGPKVCPSSGKSLPS 445
           ++T+P  NY   T S+P      P   P+S   LPS
Sbjct: 337 QETEPVTNYYTATTSVPETPEPAPAAQPASRFELPS 372


>Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical protein
            F11A10.4 protein.
          Length = 1646

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +3

Query: 342  KQNLLKTTCKQRLPFPINHTKARKCVLPLANHYHLLPVSAALFEAIAVVFV 494
            K   L    +  +  PI   +A   VLP A   HL P   AL EA+ +VFV
Sbjct: 1239 KYESLPAVLESMMNVPIPSEQA-PFVLPSATT-HLTPTQEALLEAVKIVFV 1287


>Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical protein
            F11A10.4 protein.
          Length = 1646

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +3

Query: 342  KQNLLKTTCKQRLPFPINHTKARKCVLPLANHYHLLPVSAALFEAIAVVFV 494
            K   L    +  +  PI   +A   VLP A   HL P   AL EA+ +VFV
Sbjct: 1239 KYESLPAVLESMMNVPIPSEQA-PFVLPSATT-HLTPTQEALLEAVKIVFV 1287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,570,125
Number of Sequences: 27780
Number of extensions: 219293
Number of successful extensions: 484
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)