Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_D05
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    66   3e-12
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   1.8  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    27   1.8  
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    26   4.1  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    26   4.1  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    26   5.4  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    25   9.4  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 66.5 bits (155), Expect = 3e-12
 Identities = 34/79 (43%), Positives = 46/79 (58%)
 Frame = -1

Query: 649 EIXEAFVAQTLSCAKALKLDMSKLNVNGGATALGHPLGASGSRITAHLVHEXXXXXXXXG 470
           EI EAF    ++  K L LD  ++N+NGG  A+GHPLG+SGSRI   L +         G
Sbjct: 317 EINEAFSVVAVANTKILGLDPERVNINGGGVAMGHPLGSSGSRIICTLAYILAQKDAKIG 376

Query: 469 VGSACIGGGQGIALMIETV 413
           V + C GGG   +++IE V
Sbjct: 377 VAAVCNGGGGASSIVIERV 395


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 440 LPPADAGRPHPAPQPAPSELVHEVRRDPGAGG 535
           LPPA A  P PAP PAP+  V  +   P   G
Sbjct: 469 LPPA-APAPPPAPAPAPAAPVASIAELPQQDG 499


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 446 PADAGRPHPAPQPAPSELVHEVRRDP 523
           PA  GRP+ AP+  PSE   + ++ P
Sbjct: 247 PARGGRPNRAPRRGPSETASKTQQAP 272


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 246 FFSKFFKYIVIHFANYFLMKY 184
           +  +F KY+V+H   YF+ +Y
Sbjct: 304 YIEEFLKYLVLHKDEYFIKEY 324


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -2

Query: 204 NYFLMKYF*AVIFENYMYVIFMNIQKKRIL*LAILXSCEXKLTCXELRP 58
           +YFL+K+F  V+F   M +I+ +  K+ +  LA+L      L    L P
Sbjct: 294 SYFLLKFFVRVLFGVCMILIWKSFAKQAL--LAVLPPIFKSLRLSYLEP 340


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 345 LRHFKHPLQVDFC*CRHHVAAAQTVSIMRAMPCP 446
           +RH K P Q++ C C  HV     + + R +  P
Sbjct: 215 VRHMKTPQQINDCDCGLHVCENTRILMYRLLQKP 248


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 181 LSGYF*KLYVCYFYEYTKKED 119
           L GY   L+ C FYEY + +D
Sbjct: 37  LIGYEGDLFQCSFYEYLQSDD 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,918,885
Number of Sequences: 5004
Number of extensions: 30805
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)