Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_D05
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.4  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = +2

Query: 401 GGRSNSLDHEGDALPPADAGRPHPAPQPAPSELVHEVRRDPGAGGAERVSQRGGASVDVQ 580
           G  S ++ HE   +    +  P+P    APS          GA  A + S+R G   + Q
Sbjct: 493 GAASTAVIHE-PVVETNSSPSPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNGGETNKQ 551

Query: 581 LAHVELQRL 607
               EL+RL
Sbjct: 552 ----ELKRL 556


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 564  APPRWDTRSAPPAPGSRRTSC 502
            APP    R  PP PGS   +C
Sbjct: 1647 APPN---RKLPPVPGSNYNTC 1664


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 528 APGSRRTSCTSSDGAGC 478
           +PG   +SC S+DG GC
Sbjct: 913 SPGELLSSCVSNDG-GC 928


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,577
Number of Sequences: 438
Number of extensions: 2734
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)