Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_D04
(472 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subu... 80 1e-16
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 27 1.9
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 27 1.9
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 26 3.3
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2... 26 3.3
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 4.4
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy... 25 5.8
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 25 5.8
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 5.8
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 25 7.7
>SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subunit
6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 137
Score = 80.2 bits (189), Expect = 1e-16
Identities = 43/85 (50%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = -3
Query: 296 NLSGFNKYGLLRDDC-LHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEW 120
+LSG+ KYGL DD L E D +AL RLP +R +RI RA+QLS++ ILPK EW
Sbjct: 29 HLSGYRKYGLRYDDLMLEENDDTQKALSRLPKMESYDRVYRIRRAMQLSIENKILPKSEW 88
Query: 119 TKYEEDSRDXTPIVEQVEKERLERE 45
TK EED P++ +V ER ERE
Sbjct: 89 TKPEEDYHYLRPVLAEVIAERKERE 113
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 26.6 bits (56), Expect = 1.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 351 HHGSCSKSHFIDSQIYDFNVILT 419
HHGS SK H I Q+ ++++LT
Sbjct: 474 HHGS-SKKHKIAEQLMSYDIVLT 495
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 26.6 bits (56), Expect = 1.9
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 291 KIVGPFAEAVTSVNSRGSESHHGSCSKSH-FIDSQIYDFNVILTQTTRNS 437
K + P ++ +T N + + SH GS +KSH F ++D N ++ N+
Sbjct: 320 KELSPHSQ-ITLSNVKNNHSHVGSQTKSHSFATPSVFDNNKPVSSDNHNN 368
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 3.3
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = +2
Query: 191 RQQHGMEVCGVLQLHQEFHASNHPV 265
+ +HG VC L+ H N P+
Sbjct: 432 KDRHGQTVCNACGLYARLHGHNRPI 456
>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 25.8 bits (54), Expect = 3.3
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 169 VPYSSPCKKQSYLKKSGQNMKKIPETXPQLLSKLRKRGWRESKWE 35
VP P K +S K+ ++M + P+ KLRKR +R+ WE
Sbjct: 45 VPLYDPNKVKSRGKRLRKSMYQ-PQEIQWPEDKLRKRFYRDHPWE 88
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.4 bits (53), Expect = 4.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 308 KWAYNLSGFNKYGLLRDD 255
KW + + F++YGLL D+
Sbjct: 926 KWIFKVQHFSRYGLLDDE 943
>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 357
Score = 25.0 bits (52), Expect = 5.8
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -1
Query: 139 SYLKKSGQNMKKIPETXPQLLSKLRKRGWRE 47
++L++ ++ I E P +L +RK GW +
Sbjct: 201 TFLQEKEPSLHVIIEPHPDVLKHMRKNGWMD 231
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 25.0 bits (52), Expect = 5.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -3
Query: 188 RNFRIVRAIQLSMQKTILPKEEWTKYEEDSRDXTPIVEQVEKERLE 51
R F+ + A+ LS +K ++W YE++ D EQV++ +E
Sbjct: 1637 RLFQRLLALNLSTKKAKFAFKKWLAYEKNIGDDEG-AEQVKRRAIE 1681
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 107 EDSRDXTPIVEQVEKERLEREQVGE 33
+DS+ +VEQ+E ER + +Q GE
Sbjct: 530 QDSQKLRLLVEQLELERQDLKQAGE 554
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 24.6 bits (51), Expect = 7.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 131 KEEWTKYEEDSRDXTPIVEQVEKERLEREQVGE 33
+E+ T YEED D QV++E LE E+ E
Sbjct: 58 EEDDTNYEEDIIDDEESA-QVDEEELEEEEEEE 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,464
Number of Sequences: 5004
Number of extensions: 36497
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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