Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_D04
(472 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0379 + 33505242-33505347,33505474-33505631,33506127-335061... 58 5e-09
07_01_0744 + 5687269-5687365,5687466-5687689,5688307-5688354,568... 48 4e-06
08_01_0907 + 8949102-8949160,8949662-8949842,8951816-8951941,895... 39 0.002
06_03_0540 - 21923763-21923945,21924027-21924776,21924895-219253... 32 0.20
11_06_0648 + 25873779-25874279,25874418-25875548 30 1.1
03_02_0924 + 12429764-12430120,12430562-12430637,12430803-124308... 28 3.3
11_06_0649 + 25882657-25882782,25882983-25883175,25883354-25884120 28 4.4
08_01_1043 + 10565632-10565676,10565755-10565826,10566186-105662... 28 4.4
03_06_0102 + 31656268-31656304,31656625-31656920,31657967-31658080 28 4.4
08_01_0626 - 5445676-5446687,5447099-5447430 27 5.8
08_01_0280 + 2283046-2283532,2285406-2285629,2286630-2287271 27 5.8
05_06_0025 + 25018426-25018596,25018692-25018892,25018983-250192... 27 5.8
11_06_0547 - 24855660-24855893 27 7.6
09_04_0046 - 14098660-14099400 27 7.6
>03_06_0379 +
33505242-33505347,33505474-33505631,33506127-33506174,
33506851-33506919
Length = 126
Score = 57.6 bits (133), Expect = 5e-09
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Frame = -3
Query: 290 SGFNKYGLLRDDCL---HETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEW 120
S KYGL DD H+ D+ EAL RLP VVD R+ R+ RA+ LSM+ L + +
Sbjct: 30 SRLRKYGLRYDDLYDPKHDL-DIKEALERLPREVVDARHQRLKRAMDLSMKHQYLSENDQ 88
Query: 119 TKYEEDSRDXTPIVEQVEKERLEREQVG 36
+ + +++ V+KERLERE++G
Sbjct: 89 AQQTPFRGYLSDMMDLVKKERLEREELG 116
>07_01_0744 +
5687269-5687365,5687466-5687689,5688307-5688354,
5689057-5689125
Length = 145
Score = 48.0 bits (109), Expect = 4e-06
Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = -3
Query: 290 SGFNKYGLLRDDCL--HETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKE 126
S KYGL DD + D+ EAL RLP VVD RN R+ RA+ LSM+ LP +
Sbjct: 27 SRLRKYGLRYDDLYDPYHDLDIKEALARLPREVVDARNQRLKRAMDLSMKHQYLPAD 83
>08_01_0907 +
8949102-8949160,8949662-8949842,8951816-8951941,
8952082-8952092,8952237-8952360,8952447-8952546,
8952807-8952849,8953033-8953153
Length = 254
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = -3
Query: 278 KYGLLRDDCLHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEE 123
+Y L D + D+ EAL RLP VVD N R+ R + LS + LP +E
Sbjct: 28 RYDDLFDAYQYHGLDIKEALARLPREVVDAHNQRLKRTMDLSTKHQYLPADE 79
>06_03_0540 -
21923763-21923945,21924027-21924776,21924895-21925323,
21925509-21925619,21925715-21926040,21926130-21926251,
21926905-21927020,21927119-21927243,21927338-21927596
Length = 806
Score = 32.3 bits (70), Expect = 0.20
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 278 KYGLLRDDCLHETPDVTEALRR---LPSHVVDERNFRIVRAIQLSMQKTILPKEEWTKYE 108
K +L +C E V +AL R L V DE+ + ++ M KT+ +E ++K++
Sbjct: 353 KIKVLSSECTEEAKKVQDALHREELLKQKVADEKTRHLEAVTEVEMAKTLFAQEAFSKHK 412
Query: 107 ED 102
+
Sbjct: 413 AE 414
>11_06_0648 + 25873779-25874279,25874418-25875548
Length = 543
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Frame = -3
Query: 197 VDERNFRIVRAIQLSMQKTILPKEEWTK------YEEDSRDXTPIVEQVEKERLEREQVG 36
VD + +V L+ +K KEEW K EE+ R+ + +E E E+
Sbjct: 389 VDVYSLGVVMLEVLTGKKPYFSKEEWEKEKTEERVEEEKREECEQEGKNTEEGKESEREE 448
Query: 35 EGRLNETWH 9
+G+ E WH
Sbjct: 449 DGKTKEEWH 457
>03_02_0924 +
12429764-12430120,12430562-12430637,12430803-12430849,
12431850-12431962,12432056-12432129,12432258-12432353,
12432440-12432559,12432660-12432893,12433486-12433634,
12434145-12434301,12434387-12434542,12435359-12435735,
12435871-12436020,12437071-12437253,12437440-12437643,
12437869-12437975,12438253-12438406,12438796-12438917,
12439541-12439787
Length = 1040
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = -1
Query: 220 SADFHPMLLTRETSVLYVPYSSPCKKQSYLKKSGQNMKKI--PETXPQLLSKLRKRGWRE 47
S H + R+ L + ++ PC + Y+KK + + E LL L+ +GW
Sbjct: 330 SGKLHRLEAVRDVHSLCLSWTLPCLHKEYMKKPEDYLAHLLGHEGKGSLLCFLKAKGWAS 389
Query: 46 S 44
S
Sbjct: 390 S 390
>11_06_0649 + 25882657-25882782,25882983-25883175,25883354-25884120
Length = 361
Score = 27.9 bits (59), Expect = 4.4
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Frame = -3
Query: 197 VDERNFRIVRAIQLSMQKTILPKEEW-----TKYEEDSRDXTPIVEQVEKERLER--EQV 39
+D +F +V L+ +K L KEEW K E+D ++ E+ E+E E+ E+
Sbjct: 216 IDIYSFGVVMLEVLTGKKPYLFKEEWKEEKREKCEQDGKNTEEDKEESEREEEEKTTEEQ 275
Query: 38 GEGRLNETWHS 6
E + + W S
Sbjct: 276 HEWQKRDGWSS 286
>08_01_1043 +
10565632-10565676,10565755-10565826,10566186-10566289,
10566482-10566574,10571044-10571183,10571297-10571427
Length = 194
Score = 27.9 bits (59), Expect = 4.4
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Frame = -1
Query: 361 LP*WLSEPRLLTEVTASANGPTIFRDSINMVCYGMIACMKLLM*LKHSADFHPML--LTR 188
LP WL+ L E S N P F AC+ L + + + + L
Sbjct: 48 LPFWLAHGLLSLEQAVSINVPPCFTQKTRKEIQADAACVDLRIRCPYFYELGCKIVPLVN 107
Query: 187 ETSV-LYVPYSSPCKKQSYLKKS-GQNMKKIPETXPQL 80
+ S+ L++ Y+ + + L KS +M +P+ P+L
Sbjct: 108 DRSIGLFLRYAFTSRYKEILSKSHSSSMMTVPKFVPRL 145
>03_06_0102 + 31656268-31656304,31656625-31656920,31657967-31658080
Length = 148
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -3
Query: 290 SGFNKYGLLRDDCLHETPDVTEALRRLPSHVVDERNFRIVRAI-QLSMQKTILPKEE 123
SG++K G+ +H TP EAL R+ + R R + + +LS+ I PK++
Sbjct: 46 SGYDKAGMDSGKYVHYTPGQVEALERVYAECPKPRFSRRQQLLCELSILANIEPKQK 102
>08_01_0626 - 5445676-5446687,5447099-5447430
Length = 447
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 131 KEEWTKYEEDSRDXTPIVEQVEKERLEREQVGEGRLNETW 12
+EE + E+ D +VE+ E E ++ + E NE W
Sbjct: 248 EEEMEEDEDLDEDKNDVVEEEEDEDMDEGEDDENETNEEW 287
>08_01_0280 + 2283046-2283532,2285406-2285629,2286630-2287271
Length = 450
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = -3
Query: 176 IVRAIQLSMQKTILPKEEWTKYEEDSRDXTPIVEQ--VEKERLEREQVGE 33
I++ + +S ++ + KEEW + E ++ P V++ VE E ++++ E
Sbjct: 71 ILKILDMSEEELAVVKEEWAEMEAKEKEEAPKVKETMVEWEARVKKRIEE 120
>05_06_0025 +
25018426-25018596,25018692-25018892,25018983-25019236,
25019468-25019540,25019659-25019715,25020219-25020298,
25020386-25020448,25020678-25020765,25021055-25021156,
25021296-25021369,25021690-25021754,25021933-25022096,
25022179-25022246,25022337-25022397,25022729-25022766,
25023154-25023329,25023747-25023859,25023944-25023955
Length = 619
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Frame = -3
Query: 290 SGF-NKYGLLRDDCLH------ETPDVTEALRRLPSHVVDER 186
+GF N YGL RDD E D+ ALR P H+V E+
Sbjct: 320 NGFINYYGLQRDDIREMREHYKEHGDIDMALRNFPRHLVAEK 361
>11_06_0547 - 24855660-24855893
Length = 77
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 116 KYEEDSRDXTPIVEQVEKERLEREQVGEGRLNE 18
K EED R+ T ++ V + +E+ GEG L +
Sbjct: 26 KLEEDIREVTWVLGMVHAQGIEQGLTGEGELED 58
>09_04_0046 - 14098660-14099400
Length = 246
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -3
Query: 167 AIQLSMQKTILPKEEWTKYEEDSRDXTPIVEQVEKERLEREQVGEG 30
A++L M+ LPK E + +DS+D E++ + + R+Q G G
Sbjct: 152 AVRLRMR---LPKSEVARLMKDSKDAAEAAERIMQLCVARDQGGAG 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,551,592
Number of Sequences: 37544
Number of extensions: 217336
Number of successful extensions: 752
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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