Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_D03
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    94   7e-21
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   0.53 
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    26   2.9  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   3.8  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   3.8  
SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch...    25   5.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.6  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   6.6  

>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 94.3 bits (224), Expect = 7e-21
 Identities = 35/59 (59%), Positives = 44/59 (74%)
 Frame = -3

Query: 259 RFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGT 83
           RFPN NQT+HC+QSY+D+ RC K +GE + PC  F   Y+SLCP EWV++WD QR  GT
Sbjct: 20  RFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGT 78


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -1

Query: 231  TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAP 91
            T++ V  TST      A NTS +  S      S P++ ST   TS P
Sbjct: 2353 TSSTVVNTSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTP 2399



 Score = 27.5 bits (58), Expect = 0.93
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -1

Query: 231  TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAP 91
            T++ V  TST      A NTS    S      S P++ ST   TS P
Sbjct: 1117 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTP 1163



 Score = 27.5 bits (58), Expect = 0.93
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -1

Query: 231  TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAP 91
            T++ V  TST      A NTS    S      S P++ ST   TS P
Sbjct: 2761 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTP 2807



 Score = 25.4 bits (53), Expect = 3.8
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -1

Query: 231  TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAP 91
            T++ V  TST        NTS    S      S P++ ST   TS P
Sbjct: 1177 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTP 1223



 Score = 25.4 bits (53), Expect = 3.8
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -1

Query: 231  TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAP 91
            T++ V  TST        NTS    S      S P++ ST   TS P
Sbjct: 1489 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTP 1535


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -3

Query: 298 KSPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRG-EKYEPCYYFKRVY 143
           ++ ++ +++  DP  P +  + +C  +Y +    +K+RG +KY+P +    +Y
Sbjct: 183 ETQSEKRSSQTDPSLPFKTNSLNCDVTYEEGPLTKKLRGPKKYKPSHSSWDIY 235


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 24/65 (36%), Positives = 32/65 (49%)
 Frame = -1

Query: 288 PTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTS 109
           PT KQ L+ H     +RR T+  +  T+T +    A NT+  T S      SA  S STS
Sbjct: 486 PTGKQ-LALH----PLRRETSI-LDSTNTTSTN--ATNTTTTTSSSSTASSSASASSSTS 537

Query: 108 GTTSA 94
            T+ A
Sbjct: 538 ATSGA 542


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
 Frame = -1

Query: 297  NRPPTSKQHL---STHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAP 127
            NRPP         +T  +       T  K   T + ++   +  TS A+     +  SAP
Sbjct: 1024 NRPPAPAMQARPNTTQAAAPVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAP 1083

Query: 126  MSGSTSGTTSAPKAPXPXGXRAE 58
            ++ + S  ++ P  P P     E
Sbjct: 1084 VANNVSKPSAVPPPPPPPPAEVE 1106


>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 188 NFLATVEVHVTLVAVPRLILVREPWVERCCFEVGGRFDHLRHIAYYYLAVSWI 346
           N+     +H+ L+A  RLI    P V R   E+     +L ++A  ++   W+
Sbjct: 40  NYKGAWVIHIVLIAALRLIFHAIPSVSR---ELAWTLTNLTYMAGSFIMFHWV 89


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 19/72 (26%), Positives = 38/72 (52%)
 Frame = -1

Query: 300 SNRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMS 121
           S+ P ++   +S+  S +     T +  + +S+ +   ++  +S +TIS   +  S+P S
Sbjct: 297 SSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFS-SSPTSSSSTIS---SSSSSPSS 352

Query: 120 GSTSGTTSAPKA 85
            S S TTS+ K+
Sbjct: 353 SSFSSTTSSSKS 364


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 357 ENGSHTIALQTRIDNTFIGRPNSF 428
           ENG H IA+  R +   +  PNS+
Sbjct: 518 ENGFHPIAIDLRPNEFLVVSPNSY 541


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,664,819
Number of Sequences: 5004
Number of extensions: 32149
Number of successful extensions: 91
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)