Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_D01
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    27   2.4  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    26   5.6  
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    25   7.4  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    25   7.4  

>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -3

Query: 324 AGRRSMPIIDNNINIYRSLLRILGRL 247
           AGR +MP+IDN +N+   +  ILG+L
Sbjct: 847 AGRFTMPVIDNPLNV--RINAILGKL 870


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 340 HHNPMATVGTHTAQLNSI 393
           H NP+ ++ THT+ +NS+
Sbjct: 192 HRNPIDSLTTHTSMINSV 209


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 586 TLTCELLSI*YIAKFLLSCILSANTTATG 500
           T TC  L++ Y  + L SC+++A+T   G
Sbjct: 115 TTTCSKLALHYQRRGLKSCLVAADTFRAG 143


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +3

Query: 531 QDSRNFAIYYIDNNSQVKVI--GVVIEY 608
           +D +N  + +ID NS+   I  GVV++Y
Sbjct: 604 EDPQNSIVIFIDENSEASTISKGVVLKY 631


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,466
Number of Sequences: 5004
Number of extensions: 35445
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)