Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_C24
(826 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical pr... 307 8e-84
AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical ... 36 0.035
U97192-1|AAB52434.2| 986|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z81589-11|CAI58924.1| 330|Caenorhabditis elegans Hypothetical p... 28 7.1
Z81555-8|CAB04512.2| 330|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical pr... 28 7.1
AC024859-12|AAK29966.1| 477|Caenorhabditis elegans Hypothetical... 28 7.1
Z99281-24|CAE18027.1| 155|Caenorhabditis elegans Hypothetical p... 28 9.3
>Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical
protein B0250.1 protein.
Length = 260
Score = 307 bits (753), Expect = 8e-84
Identities = 133/192 (69%), Positives = 163/192 (84%)
Frame = -3
Query: 779 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 600
MGR IR QRKGAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA+
Sbjct: 1 MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAI 60
Query: 599 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 420
+ FRDPYK+KT K +A EG++TGQF++CG KA +++GN++PVG +PEGT +CN+E K
Sbjct: 61 IAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKS 120
Query: 419 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 240
GDRG +ARASGN+ATVI HNPD K+TR++LPSGAKKV+ S NR M+G+VAGGGR DKP+L
Sbjct: 121 GDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLL 180
Query: 239 KAGRAYHKXQGQ 204
KAGR+YHK + +
Sbjct: 181 KAGRSYHKYKAK 192
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/51 (82%), Positives = 44/51 (86%)
Frame = -1
Query: 211 KVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 59
K KRN WP VRGVAMNPVEHPHGGGNHQHIG STV+R SAG+KVGLIAA
Sbjct: 190 KAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGKKVGLIAA 240
>AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical
protein F56B3.8 protein.
Length = 321
Score = 35.9 bits (79), Expect = 0.035
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -3
Query: 485 GNVMPVGAMPEGTIVCNLEE-KMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 327
GN P+G++ GT++ ++E D +A+G AT++ H D T VKLP
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLP 211
>U97192-1|AAB52434.2| 986|Caenorhabditis elegans Hypothetical
protein C01F4.2a protein.
Length = 986
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = -1
Query: 265 VDVLTNLF*KLEGHTTSXKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSA 86
+D + N K++ H + V + +P +P H HG +H HIG+ S + R +
Sbjct: 740 LDRILNHLSKMDSHESHPGVLLSPFPATLEEDSSPRHHRHG--DHSHIGRQSPLARELTT 797
Query: 85 GRKV 74
KV
Sbjct: 798 NGKV 801
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 779 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAER 669
+GR R+ +KG F +HT K L+ LD A++
Sbjct: 464 IGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQ 500
>Z81589-11|CAI58924.1| 330|Caenorhabditis elegans Hypothetical
protein F58E10.6 protein.
Length = 330
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 668 HGYIKGVVKDIIHDPGRGAPLAVVHFR 588
HG + +V I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311
>Z81555-8|CAB04512.2| 330|Caenorhabditis elegans Hypothetical
protein F58E10.6 protein.
Length = 330
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 668 HGYIKGVVKDIIHDPGRGAPLAVVHFR 588
HG + +V I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311
>Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical
protein T24B8.1 protein.
Length = 134
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 371 IGHNPDAKRTRVKLPSGAKKVL 306
IGH D +RTR LP+G KKVL
Sbjct: 57 IGHGSD-RRTRFVLPNGYKKVL 77
>AC024859-12|AAK29966.1| 477|Caenorhabditis elegans Hypothetical
protein Y71H2AM.16 protein.
Length = 477
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 171 ATPRTYGQQLRLTLXLVVCPSSFQNRFVNTSTSSNNTDH 287
++P + ++LRL V+CP FV+T SN +H
Sbjct: 388 SSPESAPRELRLPGCDVLCPMETYQEFVSTRIISNKEEH 426
>Z99281-24|CAE18027.1| 155|Caenorhabditis elegans Hypothetical
protein Y57G11C.44 protein.
Length = 155
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -3
Query: 731 VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 606
+S ++RK + LD+++ G K ++KDI +D + P+
Sbjct: 1 MSEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,065,259
Number of Sequences: 27780
Number of extensions: 460429
Number of successful extensions: 1185
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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