Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_C22
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0210 + 5812428-5812468,5812633-5812895,5814064-5814214,581... 33 0.26
06_01_0735 + 5431900-5432044,5432137-5432271,5432710-5432750,543... 31 0.80
02_01_0019 + 124871-124893,125030-125128,125379-125456,125850-12... 30 1.4
09_06_0043 + 20448793-20449823,20449915-20450030,20450491-204506... 28 5.6
08_02_0095 - 12285976-12286037,12286111-12287229,12287494-122886... 28 5.6
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001 28 7.4
01_06_0082 + 26279699-26279996,26280100-26280315,26280438-262808... 27 9.8
>09_02_0210 +
5812428-5812468,5812633-5812895,5814064-5814214,
5814678-5814763,5815182-5815286,5815444-5815504,
5816078-5816087
Length = 238
Score = 32.7 bits (71), Expect = 0.26
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 22/122 (18%)
Frame = -3
Query: 432 KVETKVADYDEVVKAISNNNILLIDVREPDEVKEHGHIPNSINIPL------GTISTVLG 271
+ E D DE + ++ ++D+R+ + +E HI NS ++PL G I T++
Sbjct: 48 RAEVSFVDGDEAKRLVAEEGYTVLDIRDRTQ-RERAHIKNSAHVPLFVENDDGDIGTIIK 106
Query: 270 E----------------MSDKEFNKTYKRPKPNQNTELIFYCMVGRRSAKAQESAIKLGF 139
+ EF K K K + ++L+ C G RS A + + GF
Sbjct: 107 RTVHSNFAGLFFGLPFTKRNLEFTKMVK-DKFSPESKLLVVCQEGLRSTGAADVLEREGF 165
Query: 138 KN 133
+N
Sbjct: 166 QN 167
>06_01_0735 +
5431900-5432044,5432137-5432271,5432710-5432750,
5433463-5433579,5433779-5433898,5433982-5434076,
5434149-5434242,5434592-5434723,5435191-5435303,
5435443-5435566,5435884-5436000,5436083-5436177,
5436269-5436362,5436655-5436780,5436854-5436966,
5437067-5437256,5437395-5437508,5437551-5437598
Length = 670
Score = 31.1 bits (67), Expect = 0.80
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = -3
Query: 435 SKVETKVADYDEVVKAISNNNILLIDVREPDEVKEHGHIPNSINIPLGTISTVLGEMSDK 256
+++ T + YDE ++ N L +D+ D EHG+ I +P T + G++S
Sbjct: 435 ARLLTGCSSYDEFLELSQRGNNLAVDLTVGDIYGEHGY--PKIGLPASTTAASFGKVSSS 492
Query: 255 EFNKTYK 235
++ YK
Sbjct: 493 RLSE-YK 498
>02_01_0019 +
124871-124893,125030-125128,125379-125456,125850-125920,
126816-126940
Length = 131
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -3
Query: 441 SESKVETKVADYDEVVKAISNNNILLIDVREPDEVKEHGHIPNSINIP 298
SES V D I++ +DVR +E+ + GH+ NS+N+P
Sbjct: 12 SESPVPVVTVDVAAASDLITSAGHRYVDVRTEEEMNK-GHLHNSLNVP 58
>09_06_0043 +
20448793-20449823,20449915-20450030,20450491-20450661,
20450761-20450807,20451090-20451182,20451571-20451709,
20452028-20452130,20452749-20452866
Length = 605
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 429 VETKVADYD--EVVKAISNNNILLIDVREPDEVKEHGHIPNSINIPL 295
VE +V D E ++ NN ++DVR + KE H P ++N+ +
Sbjct: 452 VEKRVRSVDVKEALRLQKENNFAILDVRPVADFKE-AHPPGAVNVQI 497
>08_02_0095 - 12285976-12286037,12286111-12287229,12287494-12288604,
12288695-12288757,12288851-12288913,12289268-12289318,
12289538-12289617,12290078-12290164,12290349-12290435,
12290889-12290975,12292106-12292308,12292756-12292922
Length = 1059
Score = 28.3 bits (60), Expect = 5.6
Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 4/140 (2%)
Frame = -3
Query: 615 IVLLLVMFRCGRRITQLIIRKSRTTSAGYLKLNYARKQLSSNEYKAIPQSNALSLRLYSE 436
+++ V+ R G I ++ RT Y L +L N I Q + + +
Sbjct: 900 VLMFNVLSRKGADIASKASKRKRT----YDYLVDELDKLEKNIDLMIQQEDQTQFSQHQD 955
Query: 435 SKVETKVADYDEVVKAISNNNILLIDVREPDEVKEHGHIPNS----INIPLGTISTVLGE 268
S +E A+ E K + +I +PD G P + + + + E
Sbjct: 956 SGIEIANAEQQEQEKDVQEEHI-----EDPDTANTKGRKPKRYRRIVEKIIESSKKKIEE 1010
Query: 267 MSDKEFNKTYKRPKPNQNTE 208
D E N+ RPK N N E
Sbjct: 1011 QEDAEENQNKARPKRNNNEE 1030
>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
Length = 1472
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 545 VRDFRIINCVMRRPQRNMTSSNTITXNEVY 634
V+ R+ NC MR P NM +++T ++Y
Sbjct: 1393 VKCLRLCNCEMRSPPGNMKCLSSLTKLDIY 1422
>01_06_0082 +
26279699-26279996,26280100-26280315,26280438-26280863,
26280966-26281168
Length = 380
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -3
Query: 297 LGTISTVLGEMSDKEFNKTYKRPKPNQNTELIFYCMVGRRSAKAQESAIKLGFK 136
LG V+GE+ ++N + +P + ++GR A QE I LG K
Sbjct: 178 LGESLIVMGEIGGNDYNFWFTARQPRETARQYLPDVIGRIGAAVQE-VINLGAK 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,114,575
Number of Sequences: 37544
Number of extensions: 215274
Number of successful extensions: 451
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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