Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_C21
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.5  
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom...    27   2.0  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   2.6  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    26   4.6  

>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +2

Query: 20  FRSSSCVAPLPFCRFCP----GSPXSPPWHSI-HQSSGMFFSNNGFCTSSSLTSTK 172
           FRS +      +C  CP    GS  +   HS+ H+++G   SNN    SSS  S K
Sbjct: 22  FRSRTPSPEREYCSDCPLQAKGSACNGNSHSLKHETNGASSSNNNVAKSSSHDSFK 77


>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 397

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 136 WILYKFFINFNQSTFHATGHFEYAFITEFYLTN 234
           W+L K  I+  QS FHA    E+A IT+  L N
Sbjct: 319 WLLLKGTIHGAQSFFHAICSPEFASITQPVLVN 351


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +2

Query: 377  NNAIRFE*NIIIISLFFMPSTLIKYR--FEKYLSVKVFKLSKSGIESKMLKSIVFIITKL 550
            N A+RF+ ++I I   F+PS  ++    + K L  K +K  K G+  K L S+   I ++
Sbjct: 1077 NMALRFQRDLIEIFELFVPSVTLRNNPSYIKELKEKEYKRLK-GVIEKCLSSVASRINQI 1135


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 74  SPXSPPWHSIHQSSGMFFSNNGFCTSSSLTSTKVP-FMQQG 193
           S  S  W SI+Q   + +  +GFC  S  TS +   F+Q+G
Sbjct: 269 SKISIKWMSINQLYLLIYLISGFCYISDSTSGRASRFLQEG 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,263
Number of Sequences: 5004
Number of extensions: 46478
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)