Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_C21
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23645-7|AAK26132.2|  157|Caenorhabditis elegans Hypothetical pr...    32   0.35 
Z82268-1|CAB05197.3|  508|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AF038609-6|AAK29795.1|  245|Caenorhabditis elegans Hypothetical ...    28   7.6  

>L23645-7|AAK26132.2|  157|Caenorhabditis elegans Hypothetical
           protein F54F2.7 protein.
          Length = 157

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = -1

Query: 303 DRLNNSVXXXXXXXXXXXXXXSVICKIEFSDESVFEVPCCMKGTLVEVNEELVQNPLLLK 124
           DR  N V              S +C  +  D S   V   ++GTLVE+N+ L   P  ++
Sbjct: 61  DRSTNQVSGKGKKGALILQPDSKLCTFKCKDGSEHVVRAGVRGTLVEMNDRLKTTPDFIR 120

Query: 123 NMPDD 109
             PD+
Sbjct: 121 TAPDN 125


>Z82268-1|CAB05197.3|  508|Caenorhabditis elegans Hypothetical
           protein F52B11.1a protein.
          Length = 508

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -2

Query: 695 DMRKCLKAERLQRQKANXDEXRQRHANIRARILAQSA 585
           DMRKC  A+RL  +K      RQ   N++A I+A++A
Sbjct: 42  DMRKCFSAKRLYNEKVK----RQTDENLKA-IMAKTA 73


>AF038609-6|AAK29795.1|  245|Caenorhabditis elegans Hypothetical
           protein C54E4.1 protein.
          Length = 245

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 56  CRFCPGSPXSPPWHSIHQSSGMFFSNNGFCTSSSLT 163
           C   PG+P + P   + Q     F +NG  TSS+LT
Sbjct: 102 CLPVPGTPSTIPNPQLTQRRATSFRSNGSSTSSTLT 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,902,925
Number of Sequences: 27780
Number of extensions: 258527
Number of successful extensions: 689
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)