Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_C21
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   3.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.0  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   5.0  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   8.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   8.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   8.7  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 136 WILYKFFINFNQSTFH 183
           W+   FF+N  QS FH
Sbjct: 94  WVPDTFFVNEKQSYFH 109


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 136 WILYKFFINFNQSTFH 183
           W+   FF+N  QS FH
Sbjct: 94  WVPDTFFVNEKQSYFH 109


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 136 WILYKFFINFNQSTFH 183
           W+   FF+N  QS FH
Sbjct: 33  WVPDTFFVNEKQSYFH 48


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 113 SGMFFSNNGFCTSSSLTSTK 172
           S M F NN  CTS++ +  K
Sbjct: 624 SNMGFLNNSMCTSTTTSPDK 643


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = +2

Query: 458 EKYLSVKVFK----LSKSGIESKML-KSIVFIITKLCFLI*IYISWLLRSGLKFVLEY*R 622
           ++  ++K+ K    +    +E  M+ K ++ + TK  FL+ ++  +     L FV+EY  
Sbjct: 9   DELYAIKILKKDIIIQDDDVECTMVEKRVLALSTKPPFLVQLHSCFQTMDRLYFVMEYVN 68

Query: 623 G 625
           G
Sbjct: 69  G 69


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -1

Query: 492 DNLKTFTERYFSKRYLINVDGI 427
           +N   + ++ + K Y+IN++ I
Sbjct: 95  NNYNNYNKKLYYKNYIINIEQI 116


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 429 IKNNDMMIMFHS 394
           I+NND ++ FHS
Sbjct: 256 IRNNDRILYFHS 267


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -1

Query: 492 DNLKTFTERYFSKRYLINVDGI 427
           +N   + ++ + K Y+IN++ I
Sbjct: 336 NNYNNYNKKLYYKNYIINIEQI 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,058
Number of Sequences: 438
Number of extensions: 3591
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)