Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_C17
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...   192   5e-50
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...   190   1e-49
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    27   2.0  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   2.0  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   4.5  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    26   6.0  
SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.9  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  192 bits (467), Expect = 5e-50
 Identities = 89/157 (56%), Positives = 111/157 (70%)
 Frame = -3

Query: 575 MGRYXREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 396
           M RY   P    K  KARG+ LR HFKN+ E A  I  M L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPF 60

Query: 395 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESXADNKTLDVDRLVIDHIQVN 216
           RRFNGGVGR AQ K+FG TQ RWP KS +F   LL+NAE+ A+ K LD+D+L+I H+QVN
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVN 120

Query: 215 RAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAV 105
            AP  RRRTYRAHGR+  Y+SSP HIE+ ++E E+AV
Sbjct: 121 AAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEEEEAV 157


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score =  190 bits (464), Expect = 1e-49
 Identities = 89/157 (56%), Positives = 110/157 (70%)
 Frame = -3

Query: 575 MGRYXREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 396
           M RY   P    K  KARG+ LR HFKN+ E A  I  M L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPF 60

Query: 395 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESXADNKTLDVDRLVIDHIQVN 216
           RRFNGGVGR AQ K+FG TQ RWP KS  F   LL+NAE+ A+ K LD+D+L+I H+QVN
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVN 120

Query: 215 RAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAV 105
            AP  RRRTYRAHGR+  Y+SSP HIE+ ++E E+AV
Sbjct: 121 AAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEEEEAV 157


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -2

Query: 252 RGQASHRPHSGKSRALPTQTYIPCSRS---HQPLHVVSLPHRSMS 127
           + Q+     S K RA   +T +  ++S   HQ +H +S PH S S
Sbjct: 331 QAQSPFLKKSDKERANLNKTMVSINKSINIHQSIHEISCPHHSSS 375


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 515 NLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEK-KECI 402
           NLRV  K T ++ +++   P  +  RYLK ++E  K+C+
Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 338 VLCQTALLEHSDQRRR*XDGMEYTLSFQ 421
           ++C TA+L+H D  RR   G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 508 VFTLRTHMRPQWQSGRCRSVVL 443
           V+  R  +   W+ GRCR VVL
Sbjct: 248 VYAERCRVECNWRHGRCRQVVL 269


>SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 112

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/25 (32%), Positives = 19/25 (76%)
 Frame = -2

Query: 84  MMPQRRKSGLKKKRARQKGEDDEGI 10
           M+ Q+R++  +K++ ++K +DD G+
Sbjct: 80  MINQKRETKKRKRKQKKKNDDDYGV 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,326
Number of Sequences: 5004
Number of extensions: 51084
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)