Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_C17
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433...   215   3e-56
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995...   206   1e-53
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    31   1.2  
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138...    29   3.5  
11_06_0309 + 22265906-22266929,22267451-22267629,22267966-222681...    28   8.2  

>09_02_0105 -
           4337047-4337079,4337175-4337242,4337323-4337425,
           4337507-4337737,4339307-4339347,4339437-4339473,
           4339603-4339605
          Length = 171

 Score =  215 bits (525), Expect = 3e-56
 Identities = 105/158 (66%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
 Frame = -3

Query: 575 MGRYXREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 396
           M +Y RE +NP KS KA G +LRVHFKNT ETA AIRK+PL +A RYL++VI  K+ IPF
Sbjct: 1   MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPF 60

Query: 395 RRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESXADNKTLDVDRLVIDHIQV 219
           RR+ GGVGR AQAK +    QGRWP KSA F+L LL+NAES A+ K LDVD L + HIQV
Sbjct: 61  RRYCGGVGRTAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQV 120

Query: 218 NRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAV 105
           N+A   RRRTYRAHGRINPYMSSPCHIE+ LSE+E+ V
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPV 158


>08_02_1361 -
           26398987-26399019,26399320-26399387,26399458-26399560,
           26399658-26399888,26400791-26400826,26400891-26400931,
           26401028-26401064,26401158-26401160
          Length = 183

 Score =  206 bits (503), Expect = 1e-53
 Identities = 105/170 (61%), Positives = 123/170 (72%), Gaps = 13/170 (7%)
 Frame = -3

Query: 575 MGRYXREPDNPAKSCKARGSNLRVHFK------------NTYETAMAIRKMPLRRAVRYL 432
           MG+Y  EP NP KS KA G +LRVHFK            NT ETA A+RK+PL +A RYL
Sbjct: 1   MGKYSTEPSNPTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYL 60

Query: 431 KNVIEKKECIPFRRFNGGVGRCAQAKQFGTT-QGRWPKKSAEFLLQLLRNAESXADNKTL 255
           ++VI  K+ IPFRR+ GGVGR AQ K   +  QGRWP KSA F+L LL+NAES AD K L
Sbjct: 61  EDVIAHKQAIPFRRYCGGVGRTAQVKSRQSNGQGRWPAKSARFILDLLKNAESNADVKGL 120

Query: 254 DVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAV 105
           DVD L + HIQVN+A   RRRTYRAHGRINPYMSSPCH+E+ LSE+E+AV
Sbjct: 121 DVDNLFVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHVELILSEKEEAV 170


>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
            20319770-20319887,20320607-20320676,20320774-20320854,
            20320924-20320959,20321129-20321149,20321586-20321642,
            20321716-20321827,20321905-20322178,20322454-20322556,
            20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = -3

Query: 395  RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAE--SXADNKTLDVDRLVIDHIQ 222
            R  +G V RC           R  K   EF  Q+ + +E  S  + + L +  + I H+ 
Sbjct: 1011 RNLSGRVRRCRMHDIIRLLALR--KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLS 1068

Query: 221  VNRAPCLR 198
             + APCLR
Sbjct: 1069 GSSAPCLR 1076


>11_03_0158 +
           10911997-10912078,10912203-10912288,10913780-10913857,
           10913967-10914098,10914385-10914435,10914529-10914669,
           10914754-10914876,10914989-10915066,10915448-10915541,
           10915633-10915739,10915936-10916019,10916649-10916744,
           10916835-10917023,10917705-10917780,10918507-10918610,
           10918708-10918967,10920000-10920086,10920184-10920411,
           10920752-10920826,10921264-10921346,10921552-10921661
          Length = 787

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/80 (21%), Positives = 34/80 (42%)
 Frame = -3

Query: 623 ADAFFFLSYFLLREIIMGRYXREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRA 444
           A  F F ++   ++ ++ +     +   K C  RGS +R+H KN      +    P RR 
Sbjct: 515 ARIFAFDNFTRTQKHVLAKMAERDEGTLKDCAQRGSFVRLHLKNVPTEIASKLVHPSRRL 574

Query: 443 VRYLKNVIEKKECIPFRRFN 384
              +  +++ +  I    F+
Sbjct: 575 PVVVSGLLQHESKISVLHFS 594


>11_06_0309 +
           22265906-22266929,22267451-22267629,22267966-22268179,
           22268273-22268510,22268617-22268767,22268934-22269158
          Length = 676

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 527 LCMISQGYPAPXSNDP*LFLSRENMTRKKKHRPAEF 634
           LC+       P  +D  + LS ENMT  K + PA F
Sbjct: 612 LCVQENAADRPTMSDVVVMLSSENMTLPKPNHPAYF 647


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,144,806
Number of Sequences: 37544
Number of extensions: 371711
Number of successful extensions: 925
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)