Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_C17
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   238   2e-63
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   130   9e-31
Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    28   7.4  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  238 bits (583), Expect = 2e-63
 Identities = 111/154 (72%), Positives = 127/154 (82%)
 Frame = -3

Query: 566 YXREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 387
           Y R P+N  KSCKARGS+LRVHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 386 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESXADNKTLDVDRLVIDHIQVNRAP 207
           +GG+GR AQ KQ+ TTQGRWP KSA+FLL LL+NAES A+ K LDVD LVI+HI V RA 
Sbjct: 66  HGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 125

Query: 206 CLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAV 105
            LRRRTYRAHGRINPYMSSPCHIEV L+E+ED V
Sbjct: 126 KLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVV 159


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  130 bits (314), Expect = 9e-31
 Identities = 79/154 (51%), Positives = 92/154 (59%)
 Frame = -3

Query: 566 YXREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 387
           Y R P+N  KSCKARGS+LRVHFKNT+E A     M LR               +P RR 
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAA-----MALRG--------------MPLRRA 46

Query: 386 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESXADNKTLDVDRLVIDHIQVNRAP 207
              +    + K+    +           L LL+NAES A+ K LDVD LVI+HI V RA 
Sbjct: 47  QAFLNHVKEHKEIVPFRR---------FLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 97

Query: 206 CLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAV 105
            LRRRTYRAHGRINPYMSSPCHIEV L+E+ED V
Sbjct: 98  KLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVV 131


>Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical
           protein C27A7.9 protein.
          Length = 95

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = +2

Query: 140 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACPRPKFCC 268
           CG +T  R  C  +    +C G   +L  C   +     K CC
Sbjct: 40  CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
 Frame = -3

Query: 329 WPKKSAEFLLQLLRNAESXADNKTLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 168
           W K+    +  LL  AE+     + D+D++V   I   +  P L R       +R +G  
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547

Query: 167 NPYMSSPCHIEVCLSER 117
           NP+  SPC ++   S+R
Sbjct: 548 NPH--SPCMVDGHCSKR 562


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,073,332
Number of Sequences: 27780
Number of extensions: 308449
Number of successful extensions: 718
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)