Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_C16
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70211-1|CAA94157.2|  299|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U53154-3|AAC25852.1|  346|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U23173-1|AAC46708.1|  221|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z70211-1|CAA94157.2|  299|Caenorhabditis elegans Hypothetical
           protein K11E4.1 protein.
          Length = 299

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +1

Query: 430 IKSCYE--FLHVFWRNHKTKRKSFFY 501
           +  CYE  F+H++W + K K  S+F+
Sbjct: 3   LSKCYEKVFIHIYWSSIKKKLNSYFF 28


>U53154-3|AAC25852.1|  346|Caenorhabditis elegans Hypothetical
           protein C33G8.8 protein.
          Length = 346

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 666 SFCFNFYAEFIV*LCIIRISMKQSQFENVISLID 565
           S   NF+ ++I+  C I  S+ Q QF++ I  I+
Sbjct: 167 SMIANFFPKWIIMECAIDYSLNQEQFQSFIGSIE 200


>U23173-1|AAC46708.1|  221|Caenorhabditis elegans Hypothetical
           protein K07E1.1 protein.
          Length = 221

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 456 CFLA*S*DQEEIVFLYNSPNIT 521
           CF+  + D + +VF YN PN+T
Sbjct: 4   CFILLTHDVQSLVFFYNLPNLT 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,237,571
Number of Sequences: 27780
Number of extensions: 261285
Number of successful extensions: 462
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)