Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_C15
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos...    26   2.8  
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    25   6.5  
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    25   8.6  

>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 196

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 506 TQRPDGTWRXPRRIKEGYVPQEEVPLY 426
           ++R DG+ R  R +K GY   E++  Y
Sbjct: 22  SRRKDGSVRRERAVKPGYTAPEDIKRY 48


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 473 RRIKEGYVPQEEVPLYESKGKQFRARQNDGLPVGLTPEIVAQAQKKK 333
           RR+ +   P+  +        + +ARQ   L +G++PE ++ A  KK
Sbjct: 551 RRLNDDASPKYPMNAQGKPLSRRKARQLTALELGVSPEALSSATSKK 597


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 150 DKTPQESQKKA*RNRVSRGKNKSRACXRAXRKSKTEKQGKNR 25
           DK P  S+K   +++  +  NK+ +      K K +K GK+R
Sbjct: 305 DKAPAISKKLQQKDKAEKFSNKAVSSSTTEIKLKKKKFGKHR 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,668,958
Number of Sequences: 5004
Number of extensions: 27176
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)