Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_C15
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0302 + 2188905-2188989,2189309-2189406,2189487-2189753,218...    27   6.5  

>06_01_0302 +
           2188905-2188989,2189309-2189406,2189487-2189753,
           2189906-2189947,2190071-2190078,2190230-2190273,
           2190615-2190695,2190779-2190907,2191017-2191114,
           2191188-2191448,2191537-2191581,2191748-2191881,
           2191965-2192045,2192127-2192308,2192632-2192746,
           2192873-2193056,2193144-2193329
          Length = 679

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 69  RAXRKSKTEKQGKNRXERLTR 7
           R  +K + EKQGKNR E L +
Sbjct: 528 RKQKKKRVEKQGKNRLENLKK 548


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,299,206
Number of Sequences: 37544
Number of extensions: 163337
Number of successful extensions: 409
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)