Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_C14
(604 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe... 77 2e-15
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 31 0.17
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo... 29 0.40
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 29 0.52
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 29 0.69
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 27 1.6
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 27 2.1
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy... 27 2.8
SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.8
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 26 4.9
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 25 6.4
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 25 8.5
>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 139
Score = 77.0 bits (181), Expect = 2e-15
Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 5/133 (3%)
Frame = -1
Query: 400 LKNVQKVAFSSNTTNNMDTTYMEIPLYDVEK-QQPLEKRKA---RLHYQSRKRGMLENDL 233
L N+ + S+ N M E D+++ + E R A RL YQSRKRG+LE DL
Sbjct: 7 LSNITTLLRSARCMNRMPQLRFEHTKGDLKRVNRSYETRDAMLARLKYQSRKRGILETDL 66
Query: 232 LLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEF-DNEIMNLLKKH 56
LLS FAK ++ + YD+L++ P DWDI YW ++ P+++ +++ L K+
Sbjct: 67 LLSNFAKDQIDKYPVSLLREYDQLLDEP--DWDILYWCSGEREAPEKWKSSQVFKELSKY 124
Query: 55 AKNEDKIALRPPE 17
+++ LR PE
Sbjct: 125 CRSQRNHTLRMPE 137
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 30.7 bits (66), Expect = 0.17
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -1
Query: 391 VQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPL-EKRKARLHYQSRKRGMLENDLLLSTFA 215
+Q + F + NN+DTT ++ L D+ K+ + H+ + + G ++ L+ + F
Sbjct: 654 LQAIIFDFSAVNNLDTTAVQ-SLIDIRKELEIYANETVEFHFTNIRSGWIKRTLVAAGFG 712
Query: 214 K 212
K
Sbjct: 713 K 713
>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 400
Score = 29.5 bits (63), Expect = 0.40
Identities = 25/93 (26%), Positives = 37/93 (39%)
Frame = -1
Query: 430 TRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRG 251
TR L+ LK+++ + + MD ++ + + LEKRKA LH Q K
Sbjct: 7 TREWILTLRLLKDLEDMDSIGDNVTEMDAFVRDLTM---KPYAELEKRKAELHAQKLKLV 63
Query: 250 MLENDLLLSTFAKKYLNGFNEKQTMMYDRLINS 152
LL + L + Q Y L NS
Sbjct: 64 QKRQQLLRDNY--NVLVDYARNQDAFYQLLENS 94
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 29.1 bits (62), Expect = 0.52
Identities = 18/76 (23%), Positives = 40/76 (52%)
Frame = -1
Query: 268 QSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEF 89
+ + ++ +++ F K++ F K+ + + I S +++ +IF W +++ +E
Sbjct: 191 RKQMESLVPSEVSYDDFWKRF---FWHKEVVQPIKAIQSGNDEEEIFSW-GDERSDEEES 246
Query: 88 DNEIMNLLKKHAKNED 41
DNE +N KK + ED
Sbjct: 247 DNEQVNDEKKQSSEED 262
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 28.7 bits (61), Expect = 0.69
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +2
Query: 8 SSSLGWSECNFIFIFSMFFEKIHNFIVKFFRSWLLFNYPIEYVPIVAG*VYETIVHHSLF 187
++ LG+ C F+ F K + F + F S NY ++ + A V +++H LF
Sbjct: 111 AARLGYLSCGLFFVSYFFSLKNNPFCLMLFSSHEKMNYLHRWLSVYA--VLISVLHGILF 168
Query: 188 FIKTIQ 205
I + Q
Sbjct: 169 MIFSAQ 174
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = -1
Query: 505 ETILLKRLSLSKIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNM 350
ET+ +K++ LSK+ K+++++IKM NL + N+ K S T +++
Sbjct: 33 ETVAVKKVKLSKMLKSDLSVIKMEIDLLKNLDH---PNIVKYRGSYQTNDSL 81
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = -1
Query: 493 LKRLSLSKIDKNNMNLIK----MLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIP 326
L+ L + ++D N + +K M+H R L +S NA+ ++ F T MD P
Sbjct: 756 LQNLMVLQLDNNKLTNLKASQPMIHLRILRISNNAIHQLEVDQFPHLRTLYMDLNRFNRP 815
>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 215
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -1
Query: 427 RTLNLSYNALKNVQKVAFSSNTTNNMDT-TYMEIPLYDVEKQQPLEKRKARLHYQSRKR 254
R+L +YN + SS++T N + ++P E+++ KRK + +RKR
Sbjct: 144 RSLIETYNLSSRISSSDNSSSSTGNEEVRNRSKLPSSKKEREELFRKRKEEMILAARKR 202
>SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 2.8
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Frame = -1
Query: 388 QKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRG--MLENDL-LLSTF 218
+KV FSS+ N D+TY K Q L K A L Q K+ +L DL L
Sbjct: 42 EKVKFSSSRFYNKDSTY--------SKDQGLAKESAALELQKLKQENVLLRKDLNNLEQI 93
Query: 217 AKKYLNGFNE--KQTMMYDRLINSPSN 143
+ Y G ++ K Y +N N
Sbjct: 94 SDCYAKGMDDIMKHVATYTATMNERMN 120
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 35 NFIFIFSMFFEKIHNFIVK 91
NF+ FS FFE I +F++K
Sbjct: 292 NFVNSFSSFFELISHFLIK 310
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -1
Query: 490 KRLSLSKIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYME 332
K L+L +I++ M++IK + L+Y+ K V+K Y+E
Sbjct: 460 KGLTLEEINELYMSVIKPWESGNFKLNYSEQKKVEKEKSRKGGARGESVEYVE 512
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 322 YDVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKY 206
Y+V KQQ + + + ++KRG+ N+ L AKKY
Sbjct: 783 YNVAKQQRAYEEEINRIWNAQKRGLSINN--LEELAKKY 819
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,103
Number of Sequences: 5004
Number of extensions: 55244
Number of successful extensions: 191
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -