Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_C14
(604 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117195-22|CAB55034.1| 119|Caenorhabditis elegans Hypothetical... 77 7e-15
AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like rec... 33 0.21
AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll (drosoph... 33 0.21
AL110478-3|CAB54348.1| 380|Caenorhabditis elegans Hypothetical ... 29 1.9
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass... 28 4.5
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ... 28 4.5
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ... 28 4.5
AF003383-3|ABO16467.1| 438|Caenorhabditis elegans Cyclophylin p... 28 4.5
AC084160-4|AAK39374.1| 240|Caenorhabditis elegans Hypothetical ... 28 5.9
Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p... 27 7.8
Z35663-2|CAA84735.2| 335|Caenorhabditis elegans Hypothetical pr... 27 7.8
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ... 27 7.8
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ... 27 7.8
>AL117195-22|CAB55034.1| 119|Caenorhabditis elegans Hypothetical
protein Y57A10A.29 protein.
Length = 119
Score = 77.4 bits (182), Expect = 7e-15
Identities = 33/83 (39%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Frame = -1
Query: 304 QPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFY 125
+ ++ ++ARL YQS+KRG+LEND+LL FA++ L +E + YD+LIN +WD+FY
Sbjct: 27 EKIDAKRARLLYQSKKRGILENDILLGDFAEQNLKKMSEPELKAYDKLINGEHMEWDLFY 86
Query: 124 WIVEKKPTPKEFDN-EIMNLLKK 59
++ KK P++ ++ ++ +KK
Sbjct: 87 YLSNKKSPPEDVESCQVYQKVKK 109
>AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like
receptor TOL-1 protein.
Length = 1221
Score = 32.7 bits (71), Expect = 0.21
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -1
Query: 421 LNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRGMLE 242
LN+S N ++ FSS +D +Y ++ VE Q EKR A LH + L
Sbjct: 287 LNVSRNEIEAGNSSVFSSPELEMLDASYNKLDSLPVEWLQKCEKRIAHLHLEHNSIEQLT 346
Query: 241 NDLL 230
+L
Sbjct: 347 GGVL 350
>AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll
(drosophila) family protein 1 protein.
Length = 1221
Score = 32.7 bits (71), Expect = 0.21
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -1
Query: 421 LNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRGMLE 242
LN+S N ++ FSS +D +Y ++ VE Q EKR A LH + L
Sbjct: 287 LNVSRNEIEAGNSSVFSSPELEMLDASYNKLDSLPVEWLQKCEKRIAHLHLEHNSIEQLT 346
Query: 241 NDLL 230
+L
Sbjct: 347 GGVL 350
>AL110478-3|CAB54348.1| 380|Caenorhabditis elegans Hypothetical
protein Y26D4A.8 protein.
Length = 380
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/82 (19%), Positives = 38/82 (46%)
Frame = -1
Query: 487 RLSLSKIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEK 308
++ + + +KN+ +++K LH + N N+ A S ++ E ++ +K
Sbjct: 50 KMEILEREKNSQDMLKQLHEDKKEMEGNIQSNIN--AMKSENLQYQTQSHQEKKVFAEKK 107
Query: 307 QQPLEKRKARLHYQSRKRGMLE 242
Q L++ A+L + + +E
Sbjct: 108 LQKLKENGAKLSLEIQSTSAIE 129
>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
assigned gene nameprotein 59 protein.
Length = 1592
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = -1
Query: 307 QQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDW--- 137
Q E ++ HY+ R + ML++++ + L EK + L N+
Sbjct: 690 QSEQEMKQLEAHYE-RAQKMLQDNVEQMNVENRGLRDEIEKLSQQMAALPRGGLNEQQLH 748
Query: 136 DIFYWIVEKKPTPKEFDN 83
+IF W+ E+K T +E +N
Sbjct: 749 EIFNWVSEEKATREEMEN 766
>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
protein Y87G2A.5 protein.
Length = 1050
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 262 RKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLIN-SPSNDWDIFYWIVEKK 107
R+RG+ +DL F ++ + NEK ++YD+ S DWD + ++ K
Sbjct: 181 RERGLTRHDLGRDRFNQEVWHWKNEKGDVIYDQFRKLGASVDWDRAVFTMDPK 233
>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
protein R10F2.1 protein.
Length = 2779
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 400 LKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQP 299
++ + VA+SS T + T Y+EI +DV+ P
Sbjct: 2511 IEQITVVAYSSPTKQSKTTVYLEIGPFDVQPSLP 2544
>AF003383-3|ABO16467.1| 438|Caenorhabditis elegans Cyclophylin
protein 17 protein.
Length = 438
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -1
Query: 214 KKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPK--EFDNEIMNLLKKHAKNE 44
KK +N F +K T + + + +N WD F + KPTPK F +M+ K ++E
Sbjct: 262 KKVVNTFRQKPTPAPE-VTTTKANIWDKFTVGNKAKPTPKYIPFWQRLMSTTSKPIEDE 319
>AC084160-4|AAK39374.1| 240|Caenorhabditis elegans Hypothetical
protein Y73B3B.2 protein.
Length = 240
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 118 VEKKPTPKEFDNEIMNLLKKHAKNEDKIALRPPEXR 11
+ KP+ +FD+E MNLLK +++ P + +
Sbjct: 193 INPKPSQPQFDDEQMNLLKSIINQSKIVSMMPRDTK 228
>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 27.5 bits (58), Expect = 7.8
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Frame = -2
Query: 552 GFLLKNDHL-YLFDLISKPFYSN---------DYRCLKLIKTI*I**KCCILEPLTFLIM 403
GF + +DH+ YL D ++N D R L L+ + I I++ L +
Sbjct: 1278 GFEITDDHISYLLDAFDLKEHANTQIKLLPCIDRRILMLLAKLVIKPNIVIIDQLEMFLP 1337
Query: 402 HSKMSRKWLF 373
HSKM W F
Sbjct: 1338 HSKMMTVWSF 1347
>Z35663-2|CAA84735.2| 335|Caenorhabditis elegans Hypothetical
protein T04A8.2 protein.
Length = 335
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 50 FSMFFEKIHNFIVKFFRSWLLFNYPIEYVPIVAG*VYETIVHHSLFFIKTIQILL 214
FSM F I + +F P+ Y P++ + ++HHS IQILL
Sbjct: 78 FSMIFLDIIGRTLVYFTPLCPIIAPMFYEPLIGFKIMMIVLHHSRACKSLIQILL 132
>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 27.5 bits (58), Expect = 7.8
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Frame = -2
Query: 552 GFLLKNDHL-YLFDLISKPFYSN---------DYRCLKLIKTI*I**KCCILEPLTFLIM 403
GF + +DH+ YL D ++N D R L L+ + I I++ L +
Sbjct: 1278 GFEITDDHISYLLDAFDLKEHANTQIKLLPCIDRRILMLLAKLVIKPNIVIIDQLEMFLP 1337
Query: 402 HSKMSRKWLF 373
HSKM W F
Sbjct: 1338 HSKMMTVWSF 1347
>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 27.5 bits (58), Expect = 7.8
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Frame = -2
Query: 552 GFLLKNDHL-YLFDLISKPFYSN---------DYRCLKLIKTI*I**KCCILEPLTFLIM 403
GF + +DH+ YL D ++N D R L L+ + I I++ L +
Sbjct: 1278 GFEITDDHISYLLDAFDLKEHANTQIKLLPCIDRRILMLLAKLVIKPNIVIIDQLEMFLP 1337
Query: 402 HSKMSRKWLF 373
HSKM W F
Sbjct: 1338 HSKMMTVWSF 1347
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,653,284
Number of Sequences: 27780
Number of extensions: 293470
Number of successful extensions: 990
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -