Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_C13
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    67   2e-12
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    29   0.64 
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    27   1.5  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    27   2.6  
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar...    25   6.0  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   6.0  

>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 31/107 (28%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
 Frame = -3

Query: 466 FGVTTVVNITKRKNEPSVAQIRE-LLTKLSQDHADPRTKELIKYILADDSQHTGLVINER 290
           + + +V+N+  R++EP + Q+   ++++L++ ++     EL K +  +     GL++NER
Sbjct: 130 YAMLSVINLNTRRDEPVIKQLTSYIISRLAKSNSRLEN-ELQKLLEPNSGSQVGLIVNER 188

Query: 289 ILNIPAAISVPLFASLQTELEKAHRKNMLYNFKYLIWISKTYTTGES 149
           ++N+P  +  P++  L  E++ A  +N  YNF + + +S+TYT  ES
Sbjct: 189 LINMPVQVIPPMYNMLLEEMQWAINENEPYNFTHYLLLSRTYTEIES 235


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -3

Query: 430 KNEPSVAQIRELLTKLSQDHADPRTKELIKYILADDSQHTGLVINERILNIPA 272
           KN PS + I  +L+ +  +    R + LIK +   D        NE++  +P+
Sbjct: 15  KNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPS 67


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = -3

Query: 235 ELEKAHRKNMLYNFKYLIWISKTYTTGESSEVLFANQEEKSLVSEAIASFDV--DVTDQA 62
           ++E   RKN  Y  + L  +       ESS+VL  ++E K L  E ++ FD    +TD+ 
Sbjct: 439 DMENVFRKNE-YLMEELNELKNNLEV-ESSKVLRLDEEMKCLKDEQLSQFDTVFSLTDER 496

Query: 61  DLSQWD 44
           D  Q D
Sbjct: 497 DGLQKD 502


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = -3

Query: 460 VTTVVNITKRKNEPSVA-QIRELLTK-LSQDHADPRTKELIKYILADDSQHTGLVINERI 287
           ++ VVN T+ K +     Q+   LT+ L++   DP  ++++ Y+L + S+    ++NE I
Sbjct: 239 ISHVVNATRSKKKVCKGGQVISFLTESLTKYAGDPVARKILTYLLREASRPYTKMLNEWI 298


>SPAC17G8.05 |med20||mediator complex subunit
           Med20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 18/75 (24%), Positives = 31/75 (41%)
 Frame = -3

Query: 274 AAISVPLFASLQTELEKAHRKNMLYNFKYLIWISKTYTTGESSEVLFANQEEKSLVSEAI 95
           A +        + ELE    +  L+NF+    I  +     S +V  AN  +KS+    +
Sbjct: 53  ACVDEATMIDAEPELEDIIVRTKLWNFRQSFTIEGSIYEVGSFKVAIANVLQKSVWKGIL 112

Query: 94  ASFDVDVTDQADLSQ 50
                D T+  DL++
Sbjct: 113 FHVTYDGTESVDLAR 127


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 27  SAPPS*SHCDKSAWSVTSTSKLAIASLTKDFSS*FAKSTSDD 152
           S P S +   KS+W  ++++++A+ASL    S    +ST+ D
Sbjct: 298 SFPRSGNWYTKSSWCPSNSNRVAVASLEGKVSIFSIQSTNTD 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,901,577
Number of Sequences: 5004
Number of extensions: 32183
Number of successful extensions: 114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)