Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_C13
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.1  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.8  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   8.7  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 261 YHYLHHYRLNLRKLIGKI 208
           YH L HYR  L++ I  I
Sbjct: 137 YHPLRHYRSGLKRAIRSI 154


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = -3

Query: 211 NMLYNFKY---LIWISKTYTTGESSEVLFANQEEKSLVS 104
           N +Y  ++   LIW    Y + E S  +  N  +  LVS
Sbjct: 85  NQIYGGQFVRDLIWTPTVYVSNEPSSAITGNNVKDVLVS 123


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 444 ILLKEKMNPVWHRSENCLQNYLRIMQIPEP 355
           +L   K NP  ++ E     Y+ +  +PEP
Sbjct: 449 VLTDPKKNPNVYKVETVGDKYMAVSGLPEP 478


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 444 ILLKEKMNPVWHRSENCLQNYLRIMQIPEP 355
           +L   K NP  ++ E     Y+ +  +PEP
Sbjct: 449 VLTDPKKNPNVYKVETVGDKYMAVSGLPEP 478


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = -3

Query: 346 IKYILADDSQHTGLVINERILNIPAAISVPLFASLQTELEKAHRKNMLYNFKYLIWIS 173
           IKY    +++   L I   +  I AAI  P+   L    ++   + + YN  ++I+ S
Sbjct: 292 IKYAKHKNNRRVWLTIL-LVWAISAAIGSPIVLGLNNTPDRTPDQCLFYNTDFIIYSS 348


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = -1

Query: 249 HHYRLNLRKLIGKICYTTLNTLFGSVKLTLLESHQK 142
           HH   +LR   G   +      +  V  ++L SH K
Sbjct: 2   HHLEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLK 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,589
Number of Sequences: 438
Number of extensions: 1898
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)