Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_C12
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    29   0.49 
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    27   3.4  
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    27   3.4  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   6.0  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   7.9  
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|...    25   7.9  
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz...    25   7.9  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   7.9  

>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 99  FFVILIRSFNLFFLFMKIV 155
           FF IL+RSFNLF +F  I+
Sbjct: 133 FFNILLRSFNLFIIFSPII 151


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
 Frame = -1

Query: 209 LVITTPSIKN------GLN*KTQPNNFHEQKKKIERPNKNYEKYQRISQNELK 69
           +V++T  IKN      GL+  T P N    ++    P K+  K Q+IS+N +K
Sbjct: 64  IVVSTSEIKNLFYELTGLDPDTLPVNKLALRENGVLPRKSVAKPQKISENRIK 116


>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
 Frame = +3

Query: 69  LKFILAYPLIFFVILIRSFNL-----FFLFMKIVWLCFLVQA 179
           L F   +P +F +++    N+     FF +  IVWL  L+QA
Sbjct: 222 LSFFSLFPCLFTILMKDYHNIAENGFFFGYNSIVWLAILLQA 263


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 537  DSVLNATLKVQSRLTKLESIPNNNEKKVICRNQNPYLLTQTMKHSVII 680
            DSV+ A+    S L++ ES   NN + +   NQN + ++++  +  +I
Sbjct: 1008 DSVITASNSTTSGLSRDESSNPNNYELLNAFNQNTWKISRSTSNKSLI 1055


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 331  ILYYISFCLDLLILCNAISFNSDSCQ-*E*NLCHKNQNEDCFLL 203
            + Y +++ L  LI CN   FN D  Q  + N    +Q  +CF L
Sbjct: 1966 LFYALAYDLKFLIRCNQSQFNCDILQLLKENKQMSSQLHECFQL 2009


>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
           Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 495 KNSNFELLSRLREGRVPVNITCIILNYAFDAQLCR 391
           K S   L+ RLR G +  ++  +   Y  + Q+CR
Sbjct: 63  KESTLHLVLRLRGGIIEPSLKALASKYNCEKQICR 97


>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
           Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 495 KNSNFELLSRLREGRVPVNITCIILNYAFDAQLCR 391
           K S   L+ RLR G +  ++  +   Y  + Q+CR
Sbjct: 63  KESTLHLVLRLRGGIIEPSLKALASKYNCEKQICR 97


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 534  KDSVLNATLKVQSRLTKLESIPN-NNEKKVICRNQNPYLLTQTM 662
            K SVL+AT+KV   +T      N  + KK +  NQ+P  + + +
Sbjct: 1106 KSSVLSATIKVFEPVTNYSKTRNMPSLKKFLTVNQDPLRIVKEL 1149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,490
Number of Sequences: 5004
Number of extensions: 48825
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)