Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_C12
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006678-2|AAK68392.2|  315|Caenorhabditis elegans Hypothetical ...    30   1.8  
AC006678-1|AAU20842.1|  337|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z54235-7|CAA90974.3|  611|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AC006678-2|AAK68392.2|  315|Caenorhabditis elegans Hypothetical
           protein R05G9.2a protein.
          Length = 315

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 102 FVILIRSFNLFFLFMKIVWLCFLVQAIFDRW 194
           F++++ +F LF L+  ++ LC   Q I D W
Sbjct: 192 FLLILAAFGLFILWAILIGLCLYYQVINDFW 222


>AC006678-1|AAU20842.1|  337|Caenorhabditis elegans Hypothetical
           protein R05G9.2b protein.
          Length = 337

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 102 FVILIRSFNLFFLFMKIVWLCFLVQAIFDRW 194
           F++++ +F LF L+  ++ LC   Q I D W
Sbjct: 214 FLLILAAFGLFILWAILIGLCLYYQVINDFW 244


>Z54235-7|CAA90974.3|  611|Caenorhabditis elegans Hypothetical
           protein C09G9.4 protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 190 LSKMA*TRKHNQTIFMNRKKRLKDRIRITKNI 95
           L +M  T +H  T+F  + K++KDR   T  I
Sbjct: 478 LFEMHHTNEHGVTVFQYKNKKIKDRTEDTNKI 509


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,852,484
Number of Sequences: 27780
Number of extensions: 266891
Number of successful extensions: 626
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)