Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_C10
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.03 |||mitochondrial ribosomal protein subunit Img2|Schiz...    37   0.003
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    26   5.6  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    26   5.6  
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc...    25   7.5  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    25   7.5  
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t...    25   9.9  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   9.9  

>SPAC3H8.03 |||mitochondrial ribosomal protein subunit
           Img2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = -3

Query: 268 YFLSRTKNAELPIYLKITYRGMRKISIIRKIEGD 167
           + +SRT +  LP+YL    RG + +++IRKI GD
Sbjct: 25  FHVSRTPSKNLPVYLDYKQRGTKILTLIRKIHGD 58


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 287 FFWGDPS*RITIFGNYLRYSSKRQQTFDVFP 379
           FF G P  R+  FG   R  ++RQQ  D+ P
Sbjct: 231 FFGGGPGIRVHQFGGRPRNFARRQQAQDMPP 261


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 292 KEEALNHPYFLSRTKNAELPIYLK 221
           +EEA  HP FL   ++ EL + LK
Sbjct: 93  REEARRHPKFLKNQEHLELMVALK 116


>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
           reductase AKR3C2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 436 FVRKIKEQYNYEIEKNPPEWEYVKRLLPFTTIPKI 332
           F + ++ +Y+    +   +W Y K ++P TT  KI
Sbjct: 210 FTKSLESKYHVSDTQILLKWAYSKGVIPITTTSKI 244


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/58 (22%), Positives = 24/58 (41%)
 Frame = -1

Query: 588 PYYEHTPRLRDF*SEKMDES*TTHLIWVQNYCRNHNWHYLQNITLVTENHRLCVKSKS 415
           P    TP   +F +   D    +++  V  +  NH+W      +  +E+  LC +  S
Sbjct: 571 PLLSRTPPKGEFTNSLDDTPTQSNVEKVDRFLENHDWETCSESSSASEDQSLCKQLSS 628


>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
           translocase complex subunit Tim23|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = -3

Query: 664 TASTYLIRLTIGNLNEFGRPMKKMATVLRTHSAFARLLVG--KNGRILNNSL 515
           T ++YL  L IG L      MKK   +  T      +L G  + G  + NSL
Sbjct: 87  TGTSYLSGLAIGGLWGLNEGMKKTKDITSTRLRLNGILNGVTRRGPFVGNSL 138


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 466 LKIVPIVIPAIILHPNQVSCSRFVHFFRLKVAQT 567
           L  VPI++  IIL+   V  S +V    ++V QT
Sbjct: 613 LSFVPILVSFIILYNTMVPISLYVSMEIIRVFQT 646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,053
Number of Sequences: 5004
Number of extensions: 53906
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)