Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_C10
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0660 + 10244962-10245606                                         30   1.5  
01_05_0801 + 25353708-25353914,25354307-25354429,25355035-253552...    30   1.5  
12_01_0913 + 8882193-8883510,8887633-8887865,8889619-8889871,889...    28   5.9  
08_01_0841 + 8223768-8223871,8227749-8228745,8228779-8228828,822...    28   5.9  
05_03_0066 + 7980038-7981468                                           28   7.7  
02_05_0975 + 33227431-33227730,33228556-33228636,33228883-332296...    28   7.7  

>03_02_0660 + 10244962-10245606
          Length = 214

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -3

Query: 433 VRKIKEQYNYEIEKNPPE-WEYVKRLLPFTTI--PKIIPKDSYPSGWVPPKEE 284
           V+ +KE+Y  E+ K PP  W +  RL  F     P   P  + P   V  +EE
Sbjct: 78  VQTLKERYKRELAKPPPSGWRHFSRLQEFLLAGPPPGFPPKTMPPASVKKEEE 130


>01_05_0801 +
           25353708-25353914,25354307-25354429,25355035-25355205,
           25355303-25355392,25355497-25355583,25355664-25355719,
           25355812-25355905,25356032-25356144,25356211-25356283,
           25356603-25356683,25356865-25356951,25357031-25357135,
           25357279-25357385,25357481-25357541,25357931-25358158,
           25359720-25360677,25360816-25360997,25361237-25361326,
           25361422-25361709,25361844-25362056,25362560-25362784
          Length = 1212

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -3

Query: 514 DLGAKLLPESQLALSSKH--YSSYGKSPFVRKIKEQYNYEIEKNPPEWEYVKRLLPFTTI 341
           D G+++LP + L  + K   ++ Y +     K     N  + + PP++E+     PF T 
Sbjct: 322 DFGSEILPRAVLEHNVKACVFTEYWEDIGTIKSFFDANLALTEQPPKFEFYDPKTPFFTS 381

Query: 340 PKIIP 326
           P+ +P
Sbjct: 382 PRYLP 386


>12_01_0913 +
           8882193-8883510,8887633-8887865,8889619-8889871,
           8891281-8891470,8891641-8891773,8891797-8891886
          Length = 738

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 534 RPFFPTKSRANAECVRNTVAIFFIGRPNSFKFPIVSRIKYVLAVV 668
           +PF   +   N + +   +A   IGRP  +K P+V  +  VL ++
Sbjct: 416 KPFVDLRFIDNGQDIYQRLAKSEIGRPPHWKLPVVITVAVVLVII 460


>08_01_0841 +
           8223768-8223871,8227749-8228745,8228779-8228828,
           8228896-8230396
          Length = 883

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 519 HLIWVQNYCRNHNWHYLQNITLVTENHRL 433
           H+ WVQ   +  ++   +N+ LVTEN ++
Sbjct: 319 HVYWVQLLSKQESFERFKNLILVTENSKM 347


>05_03_0066 + 7980038-7981468
          Length = 476

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -3

Query: 490 ESQLALSSKHYSSYGKSPFV--RKIKEQYNYEIEKNPPEWEYVKRL 359
           E QLAL+  HY + GK+  V  RK+KE+   ++E N    E  K L
Sbjct: 373 EGQLALTLLHYGNAGKAKKVLDRKLKEK---KVESNSTVTEKSKEL 415


>02_05_0975 + 33227431-33227730,33228556-33228636,33228883-33229680,
            33230829-33231005,33231159-33231274,33231422-33231520,
            33231598-33232040,33232147-33232184,33232343-33232600,
            33233378-33233525,33233989-33234108,33234884-33234984,
            33235090-33235213,33235386-33235498,33236103-33236214,
            33236298-33236432,33236527-33236593,33236685-33236741,
            33236774-33236900,33237221-33237338,33237418-33237929
          Length = 1347

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 655  TYLIRLTIGNLNEFGRPMKKMATVLRTHSAFARLLVGKNGRILNNS-LDLGAKL 497
            T L  L +   +   R ++KMA  L   SA + L +G N  I  N+ L L +KL
Sbjct: 1019 TALYSLNVEQCSITSRTVQKMADALHEGSALSHLSLGNNNPISGNTMLSLLSKL 1072


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,209,755
Number of Sequences: 37544
Number of extensions: 313844
Number of successful extensions: 719
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)