Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_C06
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    30   0.32 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   7.0  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   9.2  

>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 52  SYYSYDNLRDNVCIIVLLLCSITDFFLLPSL 144
           S  SYD+L D+V ++  L C +T F   PS+
Sbjct: 77  SIMSYDSLSDDVSVLSFLDCPLTTFETAPSI 107


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 319 KHYLLMYSLNALTLHLLTRTQKP 251
           K Y  + +LNA TL LLT++ +P
Sbjct: 676 KDYDFLTNLNATTLSLLTQSNRP 698


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 454  HMLMSVLAVPFHTLL*FKSHELIYVSRIMLM 362
            H L + L V FH+L     +  +Y+SRI ++
Sbjct: 1196 HQLENALIVAFHSLQDLIPNSSVYISRINVL 1226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,319,639
Number of Sequences: 5004
Number of extensions: 44214
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)