Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_C06
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125963-3|AAD14744.2|  356|Caenorhabditis elegans Serpentine re...    29   2.8  
Z81117-5|CAB03321.1|  279|Caenorhabditis elegans Hypothetical pr...    28   4.9  

>AF125963-3|AAD14744.2|  356|Caenorhabditis elegans Serpentine
           receptor, class h protein10 protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +1

Query: 1   AQHIISXFLFAKHCNILS----YYSYDNLRDNVCIIVLLLCSITDFFLLPSLFTTHIIWR 168
           A H+IS FLF  H +++     Y  Y  +R +    +  +     F ++  LF     W 
Sbjct: 57  ATHVISNFLFEFHLSVVMKPVLYLPYPVIRFSGAFFLTYINGFISFCIM-YLFIASTGWS 115

Query: 169 RISSNMIYFRFRL 207
            +   ++YFRF+L
Sbjct: 116 IL--ELLYFRFKL 126


>Z81117-5|CAB03321.1|  279|Caenorhabditis elegans Hypothetical
           protein T06E6.11 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 121 DFFLLPSLFTTHIIWRRISSNMIYFRFRLTYEATHLIFSMC 243
           + FLL S+F T I+ ++   ++IYFR      A  +++S C
Sbjct: 23  NLFLLYSMFVTKIVSKKQDLSLIYFRL-----AIDMVYSFC 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,625,402
Number of Sequences: 27780
Number of extensions: 247141
Number of successful extensions: 563
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)