Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_C05
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 28 1.1
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 27 3.5
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 27 3.5
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 26 4.6
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 26 4.6
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 26 4.6
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 26 6.0
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 25 8.0
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 25 8.0
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 8.0
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -3
Query: 514 VAFVSINSFNLFKGMPSMDASNIRPLCPDENQMYCFISWSNVG 386
+ FV+ +FNL G PS A+ + +E YC I NVG
Sbjct: 643 IGFVTTGNFNLNAGKPSGIANVLAKTIKNEKSGYCII--RNVG 683
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 332 RNDETGPTVRQASPIPQPDV 273
RNDE G RQ+ P PQP +
Sbjct: 503 RNDEKGTWDRQSLPPPQPSI 522
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 490 FNLFKGMPSMDASNIRPLCPDENQMYC 410
F++ GM D N+R L P E + YC
Sbjct: 551 FSIIYGMDDNDNKNLRWLSPVETKYYC 577
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Frame = +2
Query: 452 GSVHTWHSFEQIKTINTDES--NISF--AFSEVAEGIHL 556
GSVH+ +F++ + NT++S NIS ++SE IH+
Sbjct: 485 GSVHSATTFDKAQLSNTEDSYDNISHGTSYSEGVSSIHM 523
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 26.2 bits (55), Expect = 4.6
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = +2
Query: 479 EQIKTINTDESNISFAFSEVAEGIHLPFFVAIL*FATGILIPDTRSADLLEILSDEIAAR 658
+ +KT D S+IS + + A P F L F I +P + E++++ R
Sbjct: 164 KSLKTTAKDLSDISSSSMKKANNSSKPLFSGKLTFKANIPVPTS------EVVTENNVTR 217
Query: 659 DLLIFSNVXQYG 694
++ ++SN G
Sbjct: 218 NVTVYSNQKHLG 229
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/78 (19%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +2
Query: 296 MLAEQLV-QFRHYVYDLVPSAVSYVIGGEHVANVGPTYEAVHLVLVRTQRSDVGSVHTWH 472
+++E+ + + + +V D V V GG+ +N+GP Y +++ Q + T+
Sbjct: 345 LISEKAISKVKQHVEDAVQKGGVVVTGGKVASNLGPMYFEPTVIINAKQGMLISEEETFG 404
Query: 473 SFEQIKTINTDESNISFA 526
+ +T++ +++A
Sbjct: 405 PVGALFKFDTEDEVVAWA 422
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Frame = -3
Query: 700 WHSVLRYITENQKITCSDLV-----GEYFEEICAPGVGDQNPGGKLKDCYEEGEM 551
WH + Y E QK+ S L Y + G+ +KDC EG +
Sbjct: 21 WHQLSNYKVEKQKLDASPLTIHGKFNTYSRGNISIVFGEAPSNSNIKDCLAEGTL 75
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 123 TKSVIFEISRSKFNGILSYGCVANMASVANVFVLLWNI 236
TKS + E+ +K IL Y V + +V FV +W I
Sbjct: 39 TKSALGEVKTNKKYYILGYFLVPLLLTVIAGFVRVWKI 76
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -1
Query: 321 NWTNCSASIPHST---TRCSQCTAPSITRWTLYSIITRKRWP 205
N T + P+S+ T +Q + PS T LYS ITRK P
Sbjct: 45 NGTGSVSGSPNSSSNSTPANQGSLPSHTNPQLYSSITRKERP 86
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 470 HSFEQIKTINTDESNISFA 526
H FE +NTDES +S A
Sbjct: 595 HQFESTDEVNTDESTLSTA 613
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,075
Number of Sequences: 5004
Number of extensions: 57519
Number of successful extensions: 174
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -