Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_C05
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80028-7|AAG23984.1|  370|Caenorhabditis elegans Serpentine rece...    31   1.1  
Z81529-4|CAB04295.1|  272|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U46673-6|AAC48149.2| 1382|Caenorhabditis elegans P-glycoprotein ...    29   4.3  
U40414-3|AAA81406.1|  321|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U39678-10|AAV28360.1|  436|Caenorhabditis elegans Hypothetical p...    27   9.9  

>U80028-7|AAG23984.1|  370|Caenorhabditis elegans Serpentine
           receptor, class w protein124 protein.
          Length = 370

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +3

Query: 378 NTWPTLDQLMKQYIWFSSGHSGLMLEASILGIPLNKLKLLILTK 509
           +T  +L +  K ++ FS   +G + E SIL I +N L L ILT+
Sbjct: 19  STAKSLCEFEKSFVTFSFYITGYVYEVSILSILINILHLFILTR 62


>Z81529-4|CAB04295.1|  272|Caenorhabditis elegans Hypothetical
           protein F35E8.6 protein.
          Length = 272

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 23/97 (23%), Positives = 37/97 (38%)
 Frame = -1

Query: 483 CSKECQVWTLPTSDRCVRTRTKCTAS*VGPTLATCSPPIT*LTAEGTRS*T**RNWTNCS 304
           C K C+     T+       T    + V P + T +PP    TA              C+
Sbjct: 184 CQKTCKRCPATTAAPAAGVTTTAAPAPV-PVVPTAAPPAVVTTAAPA----------TCT 232

Query: 303 ASIPHSTTRCSQCTAPSITRWTLYSIITRKRWPRTPC 193
           + +P STT+C++         T+Y+   +K    T C
Sbjct: 233 SYMPDSTTKCAEYARNGFCTSTMYTQAAKKASCATTC 269


>U46673-6|AAC48149.2| 1382|Caenorhabditis elegans P-glycoprotein
           related protein 10 protein.
          Length = 1382

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -3

Query: 526 GKTDVAFVSINSFNLFKGMPSMDASNIRPLCPDENQMYC 410
           GK+ +  + +  ++  KG   +D  NI+ +CPD+ +  C
Sbjct: 489 GKSTLTALLLRFYDPTKGAILLDGENIKTMCPDDLRGQC 527


>U40414-3|AAA81406.1|  321|Caenorhabditis elegans Hypothetical
           protein F53B3.6 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 526 LQRGSGGDPSPLLRSNPLICHRDSDPRHPERRSPR 630
           ++R  G DP    RS+P   HRD++P   + R P+
Sbjct: 114 IRRDIGRDPQYDFRSSPQTRHRDAEPYGFDDRRPQ 148


>U39678-10|AAV28360.1|  436|Caenorhabditis elegans Hypothetical
           protein C39D10.11 protein.
          Length = 436

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = -3

Query: 412 CFISWSNVGHVFAANNVTDSRRHEIVNVMTKLDQLFGKHPPFHNPMFSMYGAFNHEMDVI 233
           C IS  N    + A+ + + +   I +++ KL   F  H P   P+ S         D+I
Sbjct: 280 CIISRDNPTCFYLAHTILNPKSGFIASLLHKLSHRFRAHTPVTEPIQSSIRGQGPPPDLI 339

Query: 232 FHN 224
           + N
Sbjct: 340 WSN 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,527,948
Number of Sequences: 27780
Number of extensions: 336710
Number of successful extensions: 1183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)