Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_C05
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        27   0.23 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        27   0.23 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        27   0.23 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.7  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   4.9  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   8.6  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 6/125 (4%)
 Frame = -3

Query: 559 GEMDPLRYLAEGKTDVAFVSINSFNLFKGMPSMDASNIRPLCPDENQM------YCFISW 398
           G    L  L +GK DVAFV + + +  +G+ S D + I   CPD  +        C +  
Sbjct: 575 GGKGALSCLLDGKGDVAFVPLTALS-EEGVQSKDLALI---CPDGGRAEINEWERCNLGL 630

Query: 397 SNVGHVFAANNVTDSRRHEIVNVMTKLDQLFGKHPPFHNPMFSMYGAFNHEMDVIFHNNT 218
                + ++   + +   E+ +       L+ K P     +  ++G++++  +++F +  
Sbjct: 631 EPPRVILSSGAKSPTVLEELTHGTLAASTLYSKRP----DLLHLFGSWSNRPNLLFKDEA 686

Query: 217 KTLAT 203
           K L +
Sbjct: 687 KDLVS 691


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 6/125 (4%)
 Frame = -3

Query: 559 GEMDPLRYLAEGKTDVAFVSINSFNLFKGMPSMDASNIRPLCPDENQM------YCFISW 398
           G    L  L +GK DVAFV + + +  +G+ S D + I   CPD  +        C +  
Sbjct: 575 GGKGALSCLLDGKGDVAFVPLTALS-EEGVQSKDLALI---CPDGGRAEINEWERCNLGL 630

Query: 397 SNVGHVFAANNVTDSRRHEIVNVMTKLDQLFGKHPPFHNPMFSMYGAFNHEMDVIFHNNT 218
                + ++   + +   E+ +       L+ K P     +  ++G++++  +++F +  
Sbjct: 631 EPPRVILSSGAKSPTVLEELTHGTLAASTLYSKRP----DLLHLFGSWSNRPNLLFKDEA 686

Query: 217 KTLAT 203
           K L +
Sbjct: 687 KDLVS 691


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 6/125 (4%)
 Frame = -3

Query: 559 GEMDPLRYLAEGKTDVAFVSINSFNLFKGMPSMDASNIRPLCPDENQM------YCFISW 398
           G    L  L +GK DVAFV + + +  +G+ S D + I   CPD  +        C +  
Sbjct: 575 GGKGALSCLLDGKGDVAFVPLTALS-EEGVQSKDLALI---CPDGGRAEINEWERCNLGL 630

Query: 397 SNVGHVFAANNVTDSRRHEIVNVMTKLDQLFGKHPPFHNPMFSMYGAFNHEMDVIFHNNT 218
                + ++   + +   E+ +       L+ K P     +  ++G++++  +++F +  
Sbjct: 631 EPPRVILSSGAKSPTVLEELTHGTLAASTLYSKRP----DLLHLFGSWSNRPNLLFKDEA 686

Query: 217 KTLAT 203
           K L +
Sbjct: 687 KDLVS 691


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 338 DLVPSAVSYVIGGEHVANVG 397
           DL P+AVSY  G  H+  +G
Sbjct: 108 DLSPAAVSYTSGFYHIPVIG 127


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 377 EHVANVGPTYEAVHLVLVRTQRS--DVGSVHTWHSFEQIKTINTDESNI 517
           +H   VG  Y   +LV  RT  S  D+  VHT    + + T+   +SN+
Sbjct: 19  QHNWQVGNEY--TYLVRSRTLTSLGDLSDVHTGILIKALLTVQAKDSNV 65


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 320 TGPTVRQASPIPQPDVLNV 264
           T P+    SP+P PD L++
Sbjct: 436 TPPSSNPVSPVPSPDPLDL 454


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 361 LRYWRRTRGQRWTNL 405
           + ++RRTR  R+TNL
Sbjct: 132 ISHYRRTRRDRYTNL 146


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 572 LLRRRGDGSPPL 537
           L+RR G+GS PL
Sbjct: 162 LIRRTGEGSKPL 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,248
Number of Sequences: 438
Number of extensions: 4182
Number of successful extensions: 29
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)