Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_C04
         (476 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4MYA0 Cluster: ClpC molecular chaperone, putative; n=1...    31   10.0 
UniRef50_A2FTD0 Cluster: Putative uncharacterized protein; n=1; ...    31   10.0 

>UniRef50_Q4MYA0 Cluster: ClpC molecular chaperone, putative; n=1;
           Theileria parva|Rep: ClpC molecular chaperone, putative
           - Theileria parva
          Length = 502

 Score = 31.5 bits (68), Expect = 10.0
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +2

Query: 272 KYISFRNKHLQHNIKLSTLTHVRIIVNIKTFILKIIAYSTCYLVACSEIIIST 430
           K++ + N+H+ +N  L+T T +R   + K F+LKII Y    L      IIS+
Sbjct: 6   KFLKYINRHI-YNYLLNTNTKLR---HYKDFLLKIIKYDKIKLFFLENFIISS 54


>UniRef50_A2FTD0 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 279

 Score = 31.5 bits (68), Expect = 10.0
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 284 FRNKHLQHNIKLSTLTHVRIIVNIKTFILKIIAYSTCYLVACSEII 421
           FRN  L + +  S  T++ + V +  F ++ I YSTC  +  S+ +
Sbjct: 211 FRNLGLSNALIFSCFTYLFVSVFVNIFFMRCIYYSTCLSINVSDAV 256


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 391,015,164
Number of Sequences: 1657284
Number of extensions: 6895113
Number of successful extensions: 13023
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13011
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26870548160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)