Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_C04
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   2.6  
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    25   4.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   4.5  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    25   5.9  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   5.9  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   7.9  

>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 353 IKTFILKIIAYSTCYLVACSEIIISTKCHNY 445
           I T ++ II   TCY V CS  +I +    Y
Sbjct: 193 IHTVMIYIILIVTCYTVYCSSSLIGSPAKMY 223


>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 313 KTKHINSRTNNCQYQNIYPKDYCLQYMLLSS 405
           KT+ ++S  N C  QN   KDY      L S
Sbjct: 36  KTEAVHSLNNTCSEQNSGTKDYLNSLQFLPS 66


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 278  ISFRNKHLQHNIKLSTLTHVRIIV 349
            ISF NK  Q+ IKL+ L+   II+
Sbjct: 3526 ISFSNKSFQNQIKLALLSGSAIII 3549


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +1

Query: 28  NVTSLTNLRVRNLRIKNCRIFII 96
           N ++L+NL++  +   NC +F++
Sbjct: 311 NESNLSNLKIETVLFSNCTVFLL 333


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 305 HNIKLSTLTHVRIIVNIKTFILKIIAY-STCYLVACSEIIISTKCHNYLNIGVLKY 469
           H++    +  +  ++  K   ++ +A+ +T YL++C   I S K +  L +  L+Y
Sbjct: 314 HSLYEKCMDRLADMIADKESNIRYLAFETTAYLISCGHSITSLKHYKELILSSLRY 369


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 278 ISFRNKHLQHNIKLSTLTHVRIIVNIKTFILK 373
           IS RNK +QH +K     +    +N   FIL+
Sbjct: 256 ISLRNKAIQHLLKSKIAANTDKAINCIEFILE 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,790,020
Number of Sequences: 5004
Number of extensions: 33934
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)