Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_C04
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0276 + 19087075-19087910,19089117-19089607,19089737-19091124     28   4.5  
11_01_0377 + 2877530-2878577,2878721-2878803                           27   7.8  

>06_03_0276 + 19087075-19087910,19089117-19089607,19089737-19091124
          Length = 904

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/64 (18%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
 Frame = +2

Query: 290 NKHLQHNIKLSTLTHVRIIVNIKTFILKIIAYSTCYLVAC--SEIIISTKCHNYLNIGVL 463
           N+H+ + +K+ +L+   +  +++T +L + A+   YL+     + I+  + H+ + +G++
Sbjct: 405 NRHVDNTMKILSLSFYHLPYHLRTCLLYLSAFPEDYLIEAENEDYILGCRVHDMV-LGLI 463

Query: 464 KYMN 475
           + ++
Sbjct: 464 RSLS 467


>11_01_0377 + 2877530-2878577,2878721-2878803
          Length = 376

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 341 IIVNIKTFILKIIAYSTCYLVACSEIIISTKCHNYLNIGVL 463
           +I +I TF L  ++Y  C++++ SE I        +  G+L
Sbjct: 116 LINSIWTFSLLALSYMFCWIISLSEAITKLVAFTSITYGIL 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,551,548
Number of Sequences: 37544
Number of extensions: 153011
Number of successful extensions: 286
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)