Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_C03
(770 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 32 0.079
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 30 0.32
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 29 0.97
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 28 1.3
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 27 2.2
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 27 3.0
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 27 3.0
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 27 3.9
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.9
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 26 6.9
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 26 6.9
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 6.9
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 9.1
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 9.1
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 32.3 bits (70), Expect = 0.079
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 766 IKVEEPAAQPEDSK-TEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKID 608
I VE QPEDSK T+V +S +EK + + S D A + +++ +D
Sbjct: 525 IFVENALKQPEDSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLD 578
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 30.3 bits (65), Expect = 0.32
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Frame = -2
Query: 763 KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESD 584
+VEE A+ S E S KPSA AE D I V I L +
Sbjct: 289 RVEEKLAKRTQSFRREDNANRERSTSRKPSADKAE-KTDKTDAIAEKVSDIRLGDGEKKS 347
Query: 583 AAAVPEI---KTPEAADAPKLADNPVDEDK 503
+ E+ KTP DAP +E++
Sbjct: 348 SETDSEVAATKTPATEDAPATNAGEAEEEE 377
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 28.7 bits (61), Expect = 0.97
Identities = 25/75 (33%), Positives = 35/75 (46%)
Frame = -2
Query: 736 EDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIKT 557
E+S + +E+SK KP+ TD N K+I++A S A P+ T
Sbjct: 33 EESLPSILGEKSEVSKPFKPAVTDPS----------NAKKEINMAIESPSKKATSPKKAT 82
Query: 556 PEAADAPKLADNPVD 512
P AA AP A + VD
Sbjct: 83 P-AAVAPVEATSAVD 96
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 28.3 bits (60), Expect = 1.3
Identities = 24/88 (27%), Positives = 37/88 (42%)
Frame = -2
Query: 763 KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESD 584
KVEEP+ + ++ + + TV + +E+ P A S VKK P+ E
Sbjct: 462 KVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSEDVKK---EPSEEKK 518
Query: 583 AAAVPEIKTPEAADAPKLADNPVDEDKP 500
E P+A AP V+E +P
Sbjct: 519 LEVSDE--APKA--APLAESKKVEEKEP 542
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/72 (23%), Positives = 30/72 (41%)
Frame = -2
Query: 724 TEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIKTPEAA 545
T+ A+ E ++ S+ + SA A I N+ DL PN + + + +
Sbjct: 42 TDKNASNQEQGTKKLESSVGEQESATKRAKIENLKDNQDLIPNNDVNGIHINNSAVADTK 101
Query: 544 DAPKLADNPVDE 509
PK+ D D+
Sbjct: 102 HKPKIGDIAADD 113
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 197 VGSGARVNVFAASSGRVSKTV 259
V SGARV ++ ASS V KT+
Sbjct: 57 VTSGARVQIYGASSRSVKKTI 77
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 27.1 bits (57), Expect = 3.0
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = -2
Query: 730 SKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEI-KTP 554
+K+E A +A EE S + A K + V SDA V + KT
Sbjct: 252 AKSESAAGLAAYELEESSSLPAIVHGNNKNARKNIATLKSKIRDIVNSDANVVEQSEKTT 311
Query: 553 EAADAPKLADNPVDEDKPAD 494
E AD + +DE KPAD
Sbjct: 312 EDADEEPETEENLDEFKPAD 331
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -2
Query: 703 AEISKEEKPSATDAEGSADSAAIIPNMVKKI--DLAPNVESDAAAVPEIKTPEA 548
A K+ +PS + +A + PN VK + D+ P + +I PEA
Sbjct: 556 ASALKDREPSEKELPSTAKETSFAPNAVKTLDEDITPQSSNWQTVAKQIIFPEA 609
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 26.6 bits (56), Expect = 3.9
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = -2
Query: 715 QATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIKTPEAADAP 536
Q T+A PS +A S +P I+ N+ +A ++PE P A +
Sbjct: 362 QDTLASNHVPSAPSNESVSSAAPSKIPVPEEAS-INEHSNITDEAVSLPEPVYPNAPTSA 420
Query: 535 KLADNPV--DEDKPAD 494
NP DE +P +
Sbjct: 421 VSVHNPTISDEAEPTE 436
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 25.8 bits (54), Expect = 6.9
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Frame = -2
Query: 742 QPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKID-------LAPNVESD 584
+PED++ V E+ A+ A +IP +KK + PN+E
Sbjct: 118 KPEDNQDPVIDIAHEVHYANVRLLAHAKTDAGEPVLIPVKLKKHSSTNLRSIIRPNIEGV 177
Query: 583 AAAVPEIKTPEAADAPKLADNPVDEDKP 500
+ P+ D PK + +D P
Sbjct: 178 QIHTIHLPRPKTEDKPKDPEGKLDTKNP 205
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/60 (25%), Positives = 33/60 (55%)
Frame = -2
Query: 754 EPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAA 575
EP +P+ S T +I+ + + + + GS A++ +++K+ID+ ++ES A+
Sbjct: 483 EPFKRPQSSSAPTILT--DINGDFEMALGASGGSRIVTAVLDSIIKRIDMDYDIESMVAS 540
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 763 KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 641
K + A+ PE SK V+ KEE S +++E S+ +
Sbjct: 56 KEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 351 PQKVRNHLTNPNLKKTNLR*TAEALS 274
PQK+ NHL N +K +N+ E +S
Sbjct: 538 PQKLSNHLYNLCVKSSNVNYARECIS 563
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 766 IKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADS 644
I E PA + K + + + S E+PS T EG+ D+
Sbjct: 609 IDFENPAVSASE-KLSTEEIIPQESNFEEPSTTKKEGNVDT 648
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,077
Number of Sequences: 5004
Number of extensions: 33345
Number of successful extensions: 97
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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