Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_C02
         (479 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...   154   5e-40
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...   154   5e-40
AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin pr...   130   7e-33
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...   128   3e-32
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   1.9  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   5.9  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   5.9  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    21   5.9  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    21   5.9  

>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
           protein.
          Length = 76

 Score =  154 bits (373), Expect = 5e-40
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = -3

Query: 441 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 262
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 261 IQKESTLHLVLRLRGG 214
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score =  154 bits (373), Expect = 5e-40
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = -3

Query: 441 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 262
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 261 IQKESTLHLVLRLRGG 214
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  154 bits (373), Expect = 5e-40
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = -3

Query: 441 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 262
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 261 IQKESTLHLVLRLRGG 214
           IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152



 Score =  154 bits (373), Expect = 5e-40
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = -3

Query: 441 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 262
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 261 IQKESTLHLVLRLRGG 214
           IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228



 Score =  154 bits (373), Expect = 5e-40
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = -3

Query: 441 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 262
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query: 261 IQKESTLHLVLRLRGG 214
           IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304



 Score =  154 bits (373), Expect = 5e-40
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = -3

Query: 441 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 262
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364

Query: 261 IQKESTLHLVLRLRGG 214
           IQKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380



 Score =  154 bits (373), Expect = 5e-40
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = -3

Query: 441 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 262
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516

Query: 261 IQKESTLHLVLRLRGG 214
           IQKESTLHLVLRLRGG
Sbjct: 517 IQKESTLHLVLRLRGG 532



 Score =  154 bits (373), Expect = 5e-40
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = -3

Query: 441 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 262
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592

Query: 261 IQKESTLHLVLRLRGG 214
           IQKESTLHLVLRLRGG
Sbjct: 593 IQKESTLHLVLRLRGG 608



 Score =  154 bits (373), Expect = 5e-40
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = -3

Query: 441 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 262
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668

Query: 261 IQKESTLHLVLRLRGG 214
           IQKESTLHLVLRLRGG
Sbjct: 669 IQKESTLHLVLRLRGG 684



 Score =  151 bits (367), Expect = 2e-39
 Identities = 74/76 (97%), Positives = 74/76 (97%)
 Frame = -3

Query: 441 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 262
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQR IFAGKQLEDGRTLSDYN
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYN 440

Query: 261 IQKESTLHLVLRLRGG 214
           IQKESTLHLVLRLRGG
Sbjct: 441 IQKESTLHLVLRLRGG 456


>AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin
           protein.
          Length = 64

 Score =  130 bits (314), Expect = 7e-33
 Identities = 63/64 (98%), Positives = 63/64 (98%)
 Frame = -3

Query: 441 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 262
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 261 IQKE 250
           IQKE
Sbjct: 61  IQKE 64


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score =  128 bits (308), Expect = 3e-32
 Identities = 62/64 (96%), Positives = 62/64 (96%)
 Frame = -3

Query: 441 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 262
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQR IFAGKQLEDGRTLSDYN
Sbjct: 49  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYN 108

Query: 261 IQKE 250
           IQKE
Sbjct: 109 IQKE 112



 Score =  102 bits (245), Expect = 1e-24
 Identities = 48/48 (100%), Positives = 48/48 (100%)
 Frame = -3

Query: 357 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 214
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 1   KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 48


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/15 (53%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
 Frame = +2

Query: 287  SSNCF-PAKMRRCWS 328
            S+ CF P+K+R CW+
Sbjct: 1112 SNRCFFPSKIRICWN 1126


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 328 RPTTSHLCRETIRRWPHSFRL*HPERIHT 242
           +P    +C+   R++  S+ L   ER HT
Sbjct: 75  KPKRQFICKYCNRQFTKSYNLLIHERTHT 103


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 310 DETLLVWRNTFLVLDFSF 363
           D  ++  R +FLV DF F
Sbjct: 479 DAAMMALRTSFLVNDFGF 496


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +2

Query: 278 VRPSSNCFPAKMRRCWSGGIPSLSWILALTFSIVSEA-STSNVMVFPVRVLTNICIVLLL 454
           V+  SN        C S  I  L WI  +   ++ +A +  N ++F   V   + IVL +
Sbjct: 221 VQMHSNLVTTSEEVCDSFSIFGLVWISLIFVVLIGDAYAVLNSVLFQ-NVYKPLPIVLSI 279

Query: 455 *KTCFN 472
            K C +
Sbjct: 280 VKNCLS 285


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +2

Query: 278 VRPSSNCFPAKMRRCWSGGIPSLSWILALTFSIVSEA-STSNVMVFPVRVLTNICIVLLL 454
           V+  SN        C S  I  L WI  +   ++ +A +  N ++F   V   + IVL +
Sbjct: 221 VQMHSNLVTTSEEVCDSFSIFGLVWISLIFVVLIGDAYAVLNSVLFQ-NVYKPLPIVLSI 279

Query: 455 *KTCFN 472
            K C +
Sbjct: 280 VKNCLS 285


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,616
Number of Sequences: 336
Number of extensions: 2567
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11247091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)