Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_C01
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    29   0.79 
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    29   0.79 
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    27   4.2  
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    26   5.6  
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    26   5.6  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    26   7.4  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    26   7.4  
SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa...    25   9.7  

>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -2

Query: 600 WLRDSERQKRRSQDLR--FDVCQQKHDHFRADSEIRSRVCRQNAKSQSSLGRLC 445
           W+R+ E++K+  QDL+  ++  +    ++  + E       Q +K   SL +LC
Sbjct: 160 WVREDEKKKKEIQDLKELYEKSEHGAKNWERERETFQNQVSQMSKQLDSLEKLC 213


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 25/94 (26%), Positives = 41/94 (43%)
 Frame = +3

Query: 480 FGGKLESVFLNLPESDHVSADRRQSVDLGNVASDVRCHVASHDDAVIDIVHRHHAGFTRH 659
           F  ++ESV L L  S  ++  + Q +   N A+  R    S  + V +   +     T H
Sbjct: 37  FYAQVESVRLGLDHSVPLAVQQWQGLIAVNYAA--RAANISRHETVTEAKKKCPELCTAH 94

Query: 660 VCVYDVGQSKARAHHNRICAE*TSLIQPARHRFV 761
           V  +  G+S+A+ H N       + + P RH  V
Sbjct: 95  VKTWKAGESEAKYHENPNPNYYKTCLDPYRHESV 128


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = -1

Query: 646 PAWCRWTMSITASSWLAT*QRTS--EATFPRS 557
           P +C+WT S T SS ++  + +S  EA++ R+
Sbjct: 129 PFFCKWTSSATVSSTISNDEMSSIPEASYSRN 160


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -3

Query: 389 LPAYIVDTFLKVTGNKPRFVDVNTKVYKTNVALSYFSSKTWYFQD 255
           LP YI     +  G     +   +KV     A  ++ + TWY QD
Sbjct: 58  LPIYIGRYTERYNGGDVSAIVFRSKVVSRRHAQIFYENNTWYIQD 102


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 263 FQDKNMEELFNNLSKTDQVIFNFD 192
           F   N+E L NN SK   VI NFD
Sbjct: 6   FYGSNVEVLLNNDSKARGVITNFD 29


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = -3

Query: 329 DVNTKVYKTNVALSYFSSKTWYFQDKNMEELFNNL---SKTDQVIFNFDVASINWVEYIN 159
           D+  K + T+  + Y   + +++  KN +++ ++L   SKTD  + N D+ + N +  ++
Sbjct: 141 DICIKDFVTSYLVPYDDVRFFFY--KNSKKVISSLIESSKTDDPMANLDIVAFNTIRILS 198


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 561 LGNVASDVRCHVASHDDAVIDIVH 632
           L NVA +   H+  +DD ++ +VH
Sbjct: 269 LNNVAKEKLTHIIKYDDYLVHLVH 292


>SPAC31G5.18c |||ubiquitin family, human C1ORF55
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 698 SPQSHLRRINKSYPTSQASVRNKRQSQLRASLYRWADPXH 817
           S  S  RR+  S  +++A   +  +SQ   SLY W DP +
Sbjct: 223 SINSWSRRMQASESSNEAEGEDS-ESQTSKSLYEWDDPLY 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,519,915
Number of Sequences: 5004
Number of extensions: 75655
Number of successful extensions: 234
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)