Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_C01
(817 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0085 + 12108474-12108552,12108656-12108759,12109726-121099... 50 2e-06
09_06_0327 + 22359524-22359602,22359732-22359835,22362073-223622... 48 1e-05
08_02_1566 + 27909297-27909390,27909542-27909645,27912899-279130... 46 5e-05
04_03_0542 + 16940464-16940527,16941906-16942101,16942204-169423... 45 8e-05
07_03_0423 + 18035688-18036572,18036659-18036978,18052618-180527... 40 0.002
04_03_0543 + 16955440-16955518,16956623-16956726,16957456-169576... 32 0.63
04_03_0539 + 16892822-16892900,16894004-16894107,16894718-168949... 31 1.1
12_01_1063 + 10974522-10974776,10975094-10975599,10976243-109763... 30 1.9
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201... 30 1.9
12_01_0730 + 6505759-6508806 29 3.3
08_02_0260 + 14990324-14990916,14991055-14991245,14997427-149974... 29 4.4
12_02_0165 - 14758453-14758752,14759991-14760770 29 5.8
02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,201... 28 7.7
>08_02_0085 +
12108474-12108552,12108656-12108759,12109726-12109925,
12110003-12110103,12110184-12110379,12110584-12110745,
12110856-12110937,12111741-12112004,12113047-12113174,
12113795-12113957
Length = 492
Score = 50.0 bits (114), Expect = 2e-06
Identities = 58/243 (23%), Positives = 102/243 (41%), Gaps = 14/243 (5%)
Frame = -3
Query: 809 DLPICIVRPAVVIGAYYEPMPGWLDKTCLFGANAIVVSPGLGLTHVIYADXXXXXXXXXV 630
DLP+ I+RP+++ EP+PGW++ + +++++ D
Sbjct: 254 DLPVVIIRPSIITSILKEPLPGWMEG--IRTIDSVIIGYAKQTLSFFLVDLNLIMDVIPG 311
Query: 629 DYVNNSIIVAGYVTANVRSDVPKIYALTSVSRNMITFGQIQKYALEFAAKMPSPKALWD- 453
D V N+++VA + A+ IY +TS N + + + P P+A +
Sbjct: 312 DMVVNAMMVA--MAAHSGEQAQTIYHVTSSLSNPAPYAVLSDAGHRYFFANPPPRAGKNG 369
Query: 452 --VFVVFTASPTLFLLLTWILQYLPAYIVDTF-LKVTGNKPRFVDVNTKVYKTNVAL-SY 285
+ F ++ F I LP I+ + + G R D ++ YK + L
Sbjct: 370 RLRRMRFFSTVASFRAHMAINYKLPLEILRLVNIALCGMFSRRYDELSRKYKFVMHLVEL 429
Query: 284 FSSKTWY---FQDKNMEELFNNLSKTDQ-----VIFNFDVASINWVEYI-NVWCLGIRKY 132
++ T + F D N E+L + K + F+FD SI+W EY V G+ KY
Sbjct: 430 YAPYTLFKGCFDDINTEKLRITMRKQEDKNDGGYCFDFDPKSIDWDEYFYKVHIPGVVKY 489
Query: 131 LLE 123
L +
Sbjct: 490 LCD 492
>09_06_0327 +
22359524-22359602,22359732-22359835,22362073-22362272,
22362359-22362459,22362551-22363005,22363079-22363645
Length = 501
Score = 47.6 bits (108), Expect = 1e-05
Identities = 53/242 (21%), Positives = 97/242 (40%), Gaps = 15/242 (6%)
Frame = -3
Query: 806 LPICIVRPAVVIGAYYEPMPGWLDKTCLFGANAIVVSPGLGLTHVIYADXXXXXXXXXVD 627
+P+ I RP+++ + +P+PGW++ T +AI++ AD D
Sbjct: 260 IPVVIARPSIITSVHRDPLPGWIEGTRTI--DAIIIGYAKQSLSCFLADLDLIMDVVPGD 317
Query: 626 YVNNSIIVAGYVTANVRSDVPKIYALTSVSRNMITFGQIQ----KYALEFAAKMPSPKAL 459
V N+++ A + S +Y +TS R+ + + +Y LE A+
Sbjct: 318 LVVNAMMAAMVAHSRGSSSEMAVYHVTSSMRHPAAYAVLYRTGWRYFLENPRVGKDGVAV 377
Query: 458 WDVFVVFTASPTLFLLLTWILQYLPAYIVDTF-LKVTG--NKPRFVDVNTKVYKTNVALS 288
V F + F + LP ++ L G R+ D++ K +
Sbjct: 378 RTRPVYFFRTIASFRAFMAVAYALPLQLLRLLSLLCFGLLFARRYADLSRKYSFVMQLVD 437
Query: 287 YFSSKTWY---FQDKNMEELFNNL----SKTDQVIFNFDVASINWVEYI-NVWCLGIRKY 132
+ + F D NME+L ++ S +FN D +I+W +Y + G+ KY
Sbjct: 438 LYGPFALFKACFDDLNMEKLRLSMATPPSSAAAALFNLDPKNIDWDDYFYRIHIPGVMKY 497
Query: 131 LL 126
+L
Sbjct: 498 VL 499
>08_02_1566 +
27909297-27909390,27909542-27909645,27912899-27913098,
27913214-27913314,27913427-27914130,27914671-27914834,
27914941-27915100
Length = 508
Score = 45.6 bits (103), Expect = 5e-05
Identities = 50/243 (20%), Positives = 98/243 (40%), Gaps = 17/243 (6%)
Frame = -3
Query: 800 ICIVRPAVVIGAYYEPMPGWLDKTCLFGANAIVVSPGLGLTHVIYADXXXXXXXXXVDYV 621
+ +VRP+++ +P+PGW+ T + +++ D D V
Sbjct: 270 VVVVRPSIITSIQRDPVPGWMQGTRTI--DTLIIGYAKQNLSCFLGDLDLVMDVIPGDMV 327
Query: 620 NNSIIVAGYV-TANVRSDVPKIYALTSVSRNMITFGQIQKYALEFAAKMPSPKALWDV-- 450
N+++ A + + P +Y ++S RN + + + + P +V
Sbjct: 328 VNAMMAAAVAHSGEAGQERPAVYHVSSSLRNPAAYSVLYEAGRRHFTEKPRVGKRGEVIP 387
Query: 449 -----FVVFTASPTLFLLLTWILQYLPAYIVDTFLKVTGNKPRFVDVNTKVYKTNVAL-- 291
F AS +++L+ + L ++V+ L G R + Y+ + L
Sbjct: 388 TKEMHFFKTIASFQVYMLVKYRLPLEILHLVNLLL--CGLFSRLYSNLARQYRYVMHLVD 445
Query: 290 --SYFSSKTWYFQDKNMEELFNNLSKT----DQVIFNFDVASINWVEYI-NVWCLGIRKY 132
F+ F D N+E L + K+ D +FNFD +I+W +Y + G+ KY
Sbjct: 446 VYGPFAFFKGCFDDINLERLRQRMGKSRNPQDDEMFNFDPKTIDWEDYFYRIHIPGVLKY 505
Query: 131 LLE 123
+L+
Sbjct: 506 ILK 508
>04_03_0542 +
16940464-16940527,16941906-16942101,16942204-16942365,
16942721-16942802,16942873-16943139,16943285-16943416
Length = 300
Score = 44.8 bits (101), Expect = 8e-05
Identities = 27/102 (26%), Positives = 49/102 (48%)
Frame = -3
Query: 809 DLPICIVRPAVVIGAYYEPMPGWLDKTCLFGANAIVVSPGLGLTHVIYADXXXXXXXXXV 630
DLP+ IVRP+++ + +PMPGW+++T +AI V+ D
Sbjct: 114 DLPVVIVRPSIITSTFQDPMPGWIEETRTI--DAIFVAYNDQTLPCFIFDGSVIFDLIPG 171
Query: 629 DYVNNSIIVAGYVTANVRSDVPKIYALTSVSRNMITFGQIQK 504
D V ++++ A + ++ IY +TS +N I I++
Sbjct: 172 DMVISAMMAA--INSHWNKQAQVIYHVTSAHQNPIQLSLIEE 211
>07_03_0423 +
18035688-18036572,18036659-18036978,18052618-18052724,
18053001-18053104,18054129-18054328,18054422-18054522,
18054695-18054841,18055007-18055166,18055287-18055368,
18056070-18056336,18056846-18056973,18057513-18057672
Length = 886
Score = 40.3 bits (90), Expect = 0.002
Identities = 12/27 (44%), Positives = 22/27 (81%)
Frame = -3
Query: 809 DLPICIVRPAVVIGAYYEPMPGWLDKT 729
+LP+ I+RP++V Y++P+PGW++ T
Sbjct: 648 ELPVVIIRPSIVSSIYHDPLPGWIEGT 674
>04_03_0543 +
16955440-16955518,16956623-16956726,16957456-16957655,
16958554-16958654,16959408-16959603,16960243-16960324,
16960402-16960668,16960790-16960917,16961285-16961465
Length = 445
Score = 31.9 bits (69), Expect = 0.63
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = -3
Query: 329 DVNTKVYKTNVALSYFSSKTWYFQDKNMEELFNNLS---KTDQVIFNFDVASINWVEYI 162
D N + + Y K W F D N+ +L+ + D IFNFD INW Y+
Sbjct: 366 DYNILMTVAKLFAPYVFFKGW-FDDTNLRKLWKATAMDQNDDASIFNFDPKCINWSSYL 423
>04_03_0539 +
16892822-16892900,16894004-16894107,16894718-16894917,
16896078-16896178,16897546-16897735,16898377-16898458,
16899374-16899501,16899846-16900026
Length = 354
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -3
Query: 287 YFSSKTWYFQDKNMEELFNNLS---KTDQVIFNFDVASINWVEYI 162
Y K W F D N+ +L+ + D IFNFD INW Y+
Sbjct: 289 YVFFKGW-FDDTNLRKLWKATAMDQNDDASIFNFDPKCINWSSYL 332
>12_01_1063 +
10974522-10974776,10975094-10975599,10976243-10976321,
10976337-10976633,10976712-10976976,10977055-10977425
Length = 590
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +3
Query: 333 KSRFVSRNLQESVHNISRQVLQDPS*QEEQRGARREYHKDVPESFGTWHFGGKLESVF 506
KS FV Q ++H +R++L+ ++E+ A +DVP W F +L V+
Sbjct: 343 KSSFVDH--QTALHRFARRILEVVLSRKEKEAAETRACQDVPNVKTAWPFAEQLSRVY 398
>07_03_0537 -
19218461-19218982,19219482-19219868,19219993-19220154,
19220464-19221117,19221233-19221277,19223300-19223845,
19223930-19224307,19224642-19225313,19225373-19225456
Length = 1149
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = -3
Query: 521 FGQIQKYALEFAAKMPSPKALWDVFVVFTASPTLF----LLLTWILQYLPAYIVDTF 363
F ++Q+YA AA KAL + V +A LF LL+ WI +Y+PA D +
Sbjct: 753 FDKVQEYAWGAAALAHLYKAL-SIAVAHSARKRLFGSAALLMGWIYEYIPALRPDMY 808
>12_01_0730 + 6505759-6508806
Length = 1015
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = -3
Query: 311 YKTNVALSYFSSKTWYFQDKNMEELFNNLSKTDQVIFNFDVASINWVEYINVWCLGIRKY 132
Y + +++ S W NME L NLS +++ S N WC I KY
Sbjct: 185 YNDDEQVTFNSDSVWQLSAPNMETLLENLSNLEELHMGMVDLSGNGER----WCYNIAKY 240
>08_02_0260 +
14990324-14990916,14991055-14991245,14997427-14997495,
14998134-14999221
Length = 646
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -1
Query: 223 QKRIKLYLILTSPQLIGLSILTFGVW 146
+KRIK Y+I ++ L+G+S+L V+
Sbjct: 279 KKRIKTYIIASTSSLLGISVLVLAVF 304
>12_02_0165 - 14758453-14758752,14759991-14760770
Length = 359
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 575 SDVPKIYALTSVSRNMITFGQIQK 504
+D P +YALT VSR +++ G +Q+
Sbjct: 92 ADEPPVYALTPVSRLLVSSGNLQQ 115
>02_01_0301 +
2011707-2015423,2016982-2017182,2017670-2017786,
2018030-2018122
Length = 1375
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = -2
Query: 405 LDPAVPAC-LYCGHFPEGY 352
LDP V C LYC FP+GY
Sbjct: 446 LDPQVQRCFLYCSIFPKGY 464
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,300,337
Number of Sequences: 37544
Number of extensions: 511650
Number of successful extensions: 1458
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1457
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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