Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_B23
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su...    99   3e-22
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    28   1.3  
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    27   2.9  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    27   3.9  
SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   6.8  

>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
           subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 270

 Score =   99 bits (238), Expect = 3e-22
 Identities = 62/199 (31%), Positives = 105/199 (52%), Gaps = 2/199 (1%)
 Frame = -1

Query: 752 CGELLNKIKIALT-QLTFLPSNNVAANQKELILARDVLEIGAQWAVAVKDVKAFERYMSQ 576
           C + L K+K+ L  Q  F+P+++    +++   AR+V E G   ++   D+++F RY SQ
Sbjct: 21  CKKELLKLKVELAKQNLFVPTSD----KEKASFARNVFEYGVLVSIQTCDIESFARYASQ 76

Query: 575 LKCYYFDYKDHLPESAFTNQXXXXXXXXXLSQNRVAEFHTELERLP-VDVIRTDLYIRHP 399
           +  +Y D    L  S+             LS+NR+AEFHT LE +P   +   D Y+   
Sbjct: 77  VIPFYHD---SLVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWV 133

Query: 398 LALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLETVRGEIAACIEKAYHTIPCAEAAR 219
           ++LEQ +MEG+++K+     +     +++FM  ++  VR EIA C EK Y  IP + A  
Sbjct: 134 ISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATS 193

Query: 218 RLNLSSQQAVLEYGKKRNW 162
            L L + +   +  ++R W
Sbjct: 194 LLYLENTKETEKLAEERGW 212


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 22/78 (28%), Positives = 33/78 (42%)
 Frame = -1

Query: 470 AEFHTELERLPVDVIRTDLYIRHPLALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLE 291
           AEF+ +L  L V+ ++  LY ++PL     +   S  ++    G V         DT  +
Sbjct: 97  AEFNPDLALLSVNTVQKTLYDKNPLTRSTAIRVMSSIRVPAINGIVLLAIQQCITDT-AD 155

Query: 290 TVRGEIAACIEKAYHTIP 237
            VR   A  I K Y   P
Sbjct: 156 RVRQSAALAITKCYSLDP 173


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 307 WIHF*KQFVERLQLALRKLTTQSLVPKPLDDLTCLLNKQYL 185
           W+++  QF+E L+ A   L T  L P  +      L   YL
Sbjct: 324 WMYYLWQFLENLRFATPLLVTAQLTPVGISGCAAALTTGYL 364


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -1

Query: 728 KIALTQLTFLPSNNVAANQKELILARDVLEIGAQWAVAVKDVKAFERYMSQLKCYYFDYK 549
           K    +L  + +N V+    E I+A     I A + +++KD     + +S + CY  D  
Sbjct: 510 KTEALELMGIKNNLVSPRNGEPIIAATQDFITAAYLLSLKDTFLDRKSISNICCYMMDAS 569

Query: 548 DHL 540
            H+
Sbjct: 570 THI 572


>SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 434 QLEDAQVLCETRPLGFEKAGIIDSILTVGL 523
           +LEDA    + + +G E+ GII  ++T GL
Sbjct: 21  ELEDALNANQEKKIGLEQMGIIVQLVTEGL 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,125,032
Number of Sequences: 5004
Number of extensions: 62044
Number of successful extensions: 169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)