Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_B17
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50300-5|AAC48103.2|  337|Caenorhabditis elegans Serpentine rece...    29   3.0  
AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical ...    27   7.0  

>U50300-5|AAC48103.2|  337|Caenorhabditis elegans Serpentine
           receptor, class t protein18 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -3

Query: 508 FKXTXXLSYIFRKLHRFSLAIRLLNFNFFYNISKNTFCTTVLPCSKSVKQ 359
           F  T  + Y++      S  + ++  +FF+ +S  T C   L  +KS++Q
Sbjct: 268 FHATSSVVYVYMNFFEISELLIVIG-HFFWQLSSGTVCIIYLTLNKSIRQ 316


>AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical
           protein H12I13.1 protein.
          Length = 592

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -3

Query: 478 FRKLHR-FSLAIRLLNFNFFYNISKNTFCTTV 386
           FRK    F ++I++ N +F Y ++KN+F  T+
Sbjct: 277 FRKCQMLFVMSIQITNQSFLYRLAKNSFSITL 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,916,479
Number of Sequences: 27780
Number of extensions: 190358
Number of successful extensions: 319
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)