Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_B16
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    30   0.20 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.8  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   9.8  

>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = -3

Query: 548 PPPXACRRNTSCTRWPCPPRTWDEPSTPSRVY---PPRSATGTAIP 420
           PP  A    ++ T    PPRT   P  PSRV    PP +  G + P
Sbjct: 10  PPRRAAPARSASTAAALPPRTMAPPPAPSRVQQAPPPTAVQGGSSP 55


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -3

Query: 548 PPPXACRRNTSCTRWPCPPRTWDEPSTPSRVYPPRSATGT 429
           PPP    R+ +    P PP+    P  P    PPRSA  T
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPP----PPRSAPST 372


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 497 PPRTWDEPSTPSRVYPP 447
           PPRTW  P   S+ + P
Sbjct: 686 PPRTWHSPDFTSKSFEP 702


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 527 RNTSCTRWPCP 495
           RNTSC  WP P
Sbjct: 302 RNTSCQSWPSP 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,966,399
Number of Sequences: 5004
Number of extensions: 34311
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)