Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_B16
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80215-7|CAB02274.1|  674|Caenorhabditis elegans Hypothetical pr...    33   0.18 
Z48544-8|CAA88441.1|  109|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AF077545-2|AAC26305.3|  356|Caenorhabditis elegans Hypothetical ...    27   9.0  
AF016673-4|AAB66125.2|  743|Caenorhabditis elegans Hypothetical ...    27   9.0  

>Z80215-7|CAB02274.1|  674|Caenorhabditis elegans Hypothetical
           protein C36B1.9 protein.
          Length = 674

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = -1

Query: 550 RLLXPRAEGIQAVHAGRARRGPGTSRRHLQESTHRDLPLVQQFRRVIE 407
           R L  R E +Q VH  R    P +  RHLQ    RDL +  +FRR ++
Sbjct: 348 RQLLDRNENMQNVHIDR--NDPFSLFRHLQRQEERDLEMHLRFRRTLD 393


>Z48544-8|CAA88441.1|  109|Caenorhabditis elegans Hypothetical
           protein ZK945.8 protein.
          Length = 109

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 530 RRNTSCTRWPCPPRTWDEPST 468
           R  ++C     PPR WD+PST
Sbjct: 46  RLKSNCCCIYTPPRVWDDPST 66


>AF077545-2|AAC26305.3|  356|Caenorhabditis elegans Hypothetical
           protein H41C03.2 protein.
          Length = 356

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 552 DASSXRVQKEYKLYTLAVPAEDLGRAVDTFKSL 454
           DAS  +V +EY  Y++ +    LG A+ T  SL
Sbjct: 205 DASLEKVVQEYPSYSMLITGHSLGGAMATIFSL 237


>AF016673-4|AAB66125.2|  743|Caenorhabditis elegans Hypothetical
           protein T06D4.3 protein.
          Length = 743

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -3

Query: 545 PPXACRRNTSCTRWPCPPRTWDEPSTPSRVYPPRSATGTAIPSCD 411
           PP     +T   + P P  T   P+  +   P  S+   +IP CD
Sbjct: 44  PPPILPSHTEALKAPAPVTTSRPPNLTTSTLPNSSSRPPSIPICD 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,988,098
Number of Sequences: 27780
Number of extensions: 201711
Number of successful extensions: 676
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)