Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_B11
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   4.5  
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch...    26   4.5  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    26   6.0  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    26   6.0  
SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces pombe...    25   7.9  
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    25   7.9  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 7/36 (19%)
 Frame = +2

Query: 593 HVLLYSSSF---RSCCLYSHHVRCNSV----YYCQL 679
           H L +S  +   RS CLY HH + + V    ++C+L
Sbjct: 88  HPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFCRL 123


>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 401

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 686 NQXIDSSTQNYNVRDENTD-NMNEMMKSTTEHDPLDKMLECCEFFKKL 546
           N+ +       N+ DE  +  +NE      E+D   + LEC E FKKL
Sbjct: 14  NENLQEDLSRLNLEDEKNELKLNEKGGVLKEND---EHLECSESFKKL 58


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 608 SSSFRSCCLYSHHVRCNSVYYCQLXD 685
           S+SFR    +SH VRC +V+ C+  D
Sbjct: 284 SNSFRR--FHSHDVRCMAVFECKSLD 307


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 391 LWHATKTNNIEPTANKHANVIAKT 462
           ++HAT    + P+ NKH+N    T
Sbjct: 549 IFHATCLQEVRPSENKHSNTNTST 572


>SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 174 YRKTVLILKPEAVKCWRDAATS 109
           Y K +L  +  A KCW D++TS
Sbjct: 241 YHKLLLFWQKPARKCWWDSSTS 262


>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = -3

Query: 698 VNETNQXIDSSTQNYNVRDENTDNMNEMMKSTTEHDPLDKMLECCEFFKKLFGN 537
           +N+T + +++S  +    D   D M  +MK + EH+  + + E  + +  +FG+
Sbjct: 407 LNDTVRGLNTSATD----DRINDLMRNLMKRSQEHEGFEDLEEIDDDYDDIFGD 456


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,560
Number of Sequences: 5004
Number of extensions: 59037
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)