Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_B10
         (505 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   3.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   3.2  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   5.5  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 130 EDYWNWPHASFEDCXG 83
           + Y +W  A +EDC G
Sbjct: 110 QPYPDWSFAKYEDCSG 125


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 124 YWNWPHASFEDCXG 83
           Y +W  A +EDC G
Sbjct: 113 YPDWSFAKYEDCSG 126


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 449 LKFLSYLIISNKI*MSESKLTK*LFCR*DVKILNICEI 336
           LKF+   +   +I +S+++L   L     +KI  +CE+
Sbjct: 86  LKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEV 123


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 130 EDYWNWPHASFEDCXGGASV 71
           E Y NW  A  ++C G  SV
Sbjct: 106 EPYPNWSWAKNQNCSGITSV 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,326
Number of Sequences: 438
Number of extensions: 2724
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)