Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_B07
         (800 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-...    49   2e-04
UniRef50_Q8RT51 Cluster: ABC-transporter protein; n=2; Pseudomon...    33   6.3  
UniRef50_A0CCD3 Cluster: Chromosome undetermined scaffold_167, w...    33   6.3  

>UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-box
           protein - Bombyx mori (Silk moth)
          Length = 272

 Score = 48.8 bits (111), Expect = 2e-04
 Identities = 23/37 (62%), Positives = 24/37 (64%)
 Frame = -2

Query: 571 RGPSXXXXXXXXXXXXXLPMRARPRHPEAVMCGTSFM 461
           +GPS             LPMRARPRHPEAVMCGTSFM
Sbjct: 236 QGPSLKVTNLLVLLLRQLPMRARPRHPEAVMCGTSFM 272



 Score = 37.9 bits (84), Expect = 0.29
 Identities = 30/82 (36%), Positives = 30/82 (36%)
 Frame = -1

Query: 800 AQGDEGQEGGXVPSQRSXXXXXXXXXXXXXXXXXXXXXXXXRVXXXXXXXXXXXXXXXXX 621
           AQGDEGQEGG VPSQRS                        RV                 
Sbjct: 160 AQGDEGQEGGIVPSQRSFFRRNFRGGRRGGGPGPMNRGGFRRVRPRNFQPGQGGQNQAQR 219

Query: 620 XXXXXXXASATTSNQQQGAKPK 555
                  ASATTSNQQQG   K
Sbjct: 220 QNGQDGDASATTSNQQQGPSLK 241


>UniRef50_Q8RT51 Cluster: ABC-transporter protein; n=2; Pseudomonas
           aeruginosa|Rep: ABC-transporter protein - Pseudomonas
           aeruginosa
          Length = 585

 Score = 33.5 bits (73), Expect = 6.3
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 619 WR*A*FCPPCPGWKLRGRTRRNPPLF 696
           WR +    PC G+  RGR RRN PLF
Sbjct: 80  WRPSSMMRPCTGYMHRGRARRNSPLF 105


>UniRef50_A0CCD3 Cluster: Chromosome undetermined scaffold_167,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_167,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 214

 Score = 33.5 bits (73), Expect = 6.3
 Identities = 19/44 (43%), Positives = 22/44 (50%)
 Frame = +1

Query: 178 YKIEISKSLKYNS*FSIQPKHINSSIYYL**KYHIFDPMIPMQF 309
           YK  I K +KY S FS+  K   S  YYL  KY+ F P     F
Sbjct: 136 YKFVIQKQIKYQSQFSVYQK--QSKDYYLLIKYYCFAPSYSYNF 177


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 742,822,342
Number of Sequences: 1657284
Number of extensions: 15146821
Number of successful extensions: 37205
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37188
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68731504465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)