Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_B06
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    29   0.54 
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    28   1.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.8  

>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 617 RDNLTLWTSDMQGDGESADAEQKEPAQDGEDQ 522
           RDNLTLWTSD + + +SA  E    A   E++
Sbjct: 226 RDNLTLWTSDAEYN-QSAKEEAPAAAAASENE 256


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 617 RDNLTLWTSDMQGDGESADAEQKEPAQD 534
           RDNLTLWTSD +    +A     E AQ+
Sbjct: 227 RDNLTLWTSDAEYSAAAAGG-NTEGAQE 253


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 520 SWSSPSCAGSFCSASADSPSPCMSEVHS 603
           S SS S + +F SAS  SPS   S + S
Sbjct: 593 SISSSSTSSTFSSASTSSPSSISSSISS 620


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,001,039
Number of Sequences: 5004
Number of extensions: 33409
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)